Redundancy analysis: A Swiss Army Knife for landscape genomics

T Capblancq, BR Forester - Methods in Ecology and Evolution, 2021 - Wiley Online Library
Landscape genomics identifies how spatial and environmental factors structure the amount
and distribution of genetic variation among populations. Landscape genomic analyses have …

A practical guide to environmental association analysis in landscape genomics

C Rellstab, F Gugerli, AJ Eckert, AM Hancock… - Molecular …, 2015 - Wiley Online Library
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …

LEA: An R package for landscape and ecological association studies

E Frichot, O François - Methods in Ecology and Evolution, 2015 - Wiley Online Library
Based on population genomic and environmental data, genomewide ecological association
studies aim at detecting allele frequencies that exhibit significant statistical association with …

Ecological genomics meets community‐level modelling of biodiversity: Map** the genomic landscape of current and future environmental adaptation

MC Fitzpatrick, SR Keller - Ecology letters, 2015 - Wiley Online Library
Local adaptation is a central feature of most species occupying spatially heterogeneous
environments, and may factor critically in responses to environmental change. However …

Harnessing genomics for delineating conservation units

WC Funk, JK McKay, PA Hohenlohe… - Trends in ecology & …, 2012 - cell.com
Genomic data have the potential to revolutionize the delineation of conservation units (CUs)
by allowing the detection of adaptive genetic variation, which is otherwise difficult for rare …

Individual dispersal, landscape connectivity and ecological networks

M Baguette, S Blanchet, D Legrand… - Biological …, 2013 - Wiley Online Library
Connectivity is classically considered an emergent property of landscapes encapsulating
individuals' flows across space. However, its operational use requires a precise …

Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization

L Orsini, J Vanoverbeke, I Swillen, J Mergeay… - Molecular …, 2013 - Wiley Online Library
Empirical population genetic studies have been dominated by a neutralist view, according to
which gene flow and drift are the main forces driving population genetic structure in nature …

Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation

SP Flanagan, BR Forester, EK Latch… - Evolutionary …, 2018 - Wiley Online Library
Identifying and monitoring locally adaptive genetic variation can have direct utility for
conserving species at risk, especially when management may include actions such as …

Testing for associations between loci and environmental gradients using latent factor mixed models

E Frichot, SD Schoville, G Bouchard… - Molecular biology and …, 2013 - academic.oup.com
Adaptation to local environments often occurs through natural selection acting on a large
number of loci, each having a weak phenotypic effect. One way to detect these loci is to …

Landscape genetics in a changing world: disentangling historical and contemporary influences and inferring change

CW Epps, N Keyghobadi - Molecular ecology, 2015 - Wiley Online Library
Landscape genetics seeks to determine the effect of landscape features on gene flow and
genetic structure. Often, such analyses are intended to inform conservation and …