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De novo protein design by deep network hallucination
There has been considerable recent progress in protein structure prediction using deep
neural networks to predict inter-residue distances from amino acid sequences,–. Here we …
neural networks to predict inter-residue distances from amino acid sequences,–. Here we …
Anomalous diffraction in crystallographic phase evaluation
WA Hendrickson - Quarterly reviews of biophysics, 2014 - cambridge.org
X-ray diffraction patterns from crystals of biological macromolecules contain sufficient
information to define atomic structures, but atomic positions are inextricable without having …
information to define atomic structures, but atomic positions are inextricable without having …
Codon influence on protein expression in E. coli correlates with mRNA levels
Degeneracy in the genetic code, which enables a single protein to be encoded by a
multitude of synonymous gene sequences, has an important role in regulating protein …
multitude of synonymous gene sequences, has an important role in regulating protein …
Exploring the relationships between protein sequence, structure and solubility
Aggregation can be thought of as a form of protein folding in which intermolecular
associations lead to the formation of large, insoluble assemblies. Various types of …
associations lead to the formation of large, insoluble assemblies. Various types of …
The Protein Model Portal—a comprehensive resource for protein structure and model information
J Haas, S Roth, K Arnold, F Kiefer, T Schmidt… - Database, 2013 - academic.oup.com
Abstract The Protein Model Portal (PMP) has been developed to foster effective use of 3D
molecular models in biomedical research by providing convenient and comprehensive …
molecular models in biomedical research by providing convenient and comprehensive …
Principles for designing proteins with cavities formed by curved β sheets
Active sites and ligand-binding cavities in native proteins are often formed by curved β
sheets, and the ability to control β-sheet curvature would allow design of binding proteins …
sheets, and the ability to control β-sheet curvature would allow design of binding proteins …
Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal
L Bordoli, T Schwede - Homology Modeling: Methods and Protocols, 2012 - Springer
Comparative protein structure modeling is a computational approach to build three-
dimensional structural models for proteins using experimental structures of related protein …
dimensional structural models for proteins using experimental structures of related protein …
[HTML][HTML] A high through-put platform for recombinant antibodies to folded proteins
Antibodies are key reagents in biology and medicine, but commercial sources are rarely
recombinant and thus do not provide a permanent and renewable resource. Here, we …
recombinant and thus do not provide a permanent and renewable resource. Here, we …
Solubility-Weighted Index: fast and accurate prediction of protein solubility
Motivation Recombinant protein production is a widely used technique in the biotechnology
and biomedical industries, yet only a quarter of target proteins are soluble and can therefore …
and biomedical industries, yet only a quarter of target proteins are soluble and can therefore …
Aspirin's active metabolite salicylic acid targets high mobility group box 1 to modulate inflammatory responses
Salicylic acid (SA) and its derivatives have been used for millennia to reduce pain, fever and
inflammation. In addition, prophylactic use of acetylsalicylic acid, commonly known as …
inflammation. In addition, prophylactic use of acetylsalicylic acid, commonly known as …