Generic nature of the condensed states of proteins

M Fuxreiter, M Vendruscolo - Nature cell biology, 2021 - nature.com
Proteins undergoing liquid–liquid phase separation are being discovered at an increasing
rate. Since at the high concentrations present in the cell most proteins would be expected to …

A glimpse of structural biology through X-ray crystallography

Y Shi - Cell, 2014 - cell.com
Since determination of the myoglobin structure in 1957, X-ray crystallography, as the
anchoring tool of structural biology, has played an instrumental role in deciphering the …

DNA-dependent formation of transcription factor pairs alters their binding specificity

A Jolma, Y Yin, KR Nitta, K Dave, A Popov, M Taipale… - Nature, 2015 - nature.com
Gene expression is regulated by transcription factors (TFs), proteins that recognize short
DNA sequence motifs,,. Such sequences are very common in the human genome, and an …

[HTML][HTML] DNA-binding specificities of human transcription factors

A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta… - Cell, 2013 - cell.com
Although the proteins that read the gene regulatory code, transcription factors (TFs), have
been largely identified, it is not well known which sequences TFs can recognize. We have …

The role of DNA shape in protein–DNA recognition

R Rohs, SM West, A Sosinsky, P Liu, RS Mann… - Nature, 2009 - nature.com
The recognition of specific DNA sequences by proteins is thought to depend on two types of
mechanism: one that involves the formation of hydrogen bonds with specific bases, primarily …

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å

NP Pavletich, CO Pabo - Science, 1991 - science.org
The zinc finger DNA-binding motif occurs in many proteins that regulate eukaryotic gene
expression. The crystal structure of a complex containing the three zinc fingers from Zif268 …

Origins of specificity in protein-DNA recognition

R Rohs, X **, SM West, R Joshi… - Annual review of …, 2010 - annualreviews.org
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …

Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations

Y Cho, S Gorina, PD Jeffrey, NP Pavletich - Science, 1994 - science.org
Mutations in the p53 tumor suppressor are the most frequently observed genetic alterations
in human cancer. The majority of the mutations occur in the core domain which contains the …

[HTML][HTML] Structural perspective of cooperative transcription factor binding

E Morgunova, J Taipale - Current opinion in structural biology, 2017 - Elsevier
Highlights•Transcription factors can cooperate with each other via multiple mechanisms that
have different specificities and ranges.•Cooperativity can result from direct protein–protein …

Crystal structure of a CAP-DNA complex: the DNA is bent by 90

SC Schultz, GC Shields, TA Steitz - Science, 1991 - science.org
The 3 angstrom resolution crystal structure of the Escherichia coli catabolite gene activator
protein (CAP) complexed with a 30-base pair DNA sequence shows that the DNA is bent by …