Molecular similarity in chemical informatics and predictive toxicity modeling: From quantitative read-across (q-RA) to quantitative read-across structure–activity …

A Banerjee, S Kar, K Roy, G Patlewicz… - Critical Reviews in …, 2024 - Taylor & Francis
This article aims to provide a comprehensive critical, yet readable, review of general interest
to the chemistry community on molecular similarity as applied to chemical informatics and …

How to correctly develop q-RASAR models for predictive cheminformatics

A Banerjee, K Roy - Expert Opinion on Drug Discovery, 2024 - Taylor & Francis
One of the earliest and simplest forms of in silico predictive cheminformatics is the
Quantitative Structure-Activity Relationship (QSAR). This algorithm aims to develop a …

The application of chemical similarity measures in an unconventional modeling framework c-RASAR along with dimensionality reduction techniques to a …

A Banerjee, K Roy - Scientific Reports, 2024 - nature.com
With the exponential progress in the field of cheminformatics, the conventional modeling
approaches have so far been to employ supervised and unsupervised machine learning …

[HTML][HTML] Organic Sunscreens and Their Products of Degradation in Biotic and Abiotic Conditions—In Silico Studies of Drug-Likeness and Human Placental Transport

AW Sobańska, A Banerjee, K Roy - International Journal of Molecular …, 2024 - mdpi.com
A total of 16 organic sunscreens and over 160 products of their degradation in biotic and
abiotic conditions were investigated in the context of their safety during pregnancy. Drug …

ARKA: a framework of dimensionality reduction for machine-learning classification modeling, risk assessment, and data gap-filling of sparse environmental toxicity …

A Banerjee, K Roy - Environmental Science: Processes & Impacts, 2024 - pubs.rsc.org
Due to the lack of experimental toxicity data for environmental chemicals, there arises a
need to fill data gaps by in silico approaches. One of the most commonly used in silico …

Cheminformatic Read-Across Approach Revealed Ultraviolet Filter Cinoxate as an Obesogenic Peroxisome Proliferator-Activated Receptor γ Agonist

S An, IG Park, SY Hwang, J Gong, Y Lee… - Chemical Research …, 2024 - ACS Publications
This study introduces a novel cheminformatic read-across approach designed to identify
potential environmental obesogens, substances capable of disrupting metabolism and …

Transparent Machine Learning Model to Understand Drug Permeability through the Blood–Brain Barrier

H Jia, GC Sosso - Journal of Chemical Information and Modeling, 2024 - ACS Publications
The blood–brain barrier (BBB) selectively regulates the passage of chemical compounds
into and out of the central nervous system (CNS). As such, understanding the permeability of …

Machine learning assisted classification RASAR modeling for the nephrotoxicity potential of a curated set of orally active drugs

A Banerjee, K Roy - Scientific Reports, 2025 - nature.com
We have adopted the classification Read-Across Structure–Activity Relationship (c-RASAR)
approach in the present study for machine-learning (ML)-based model development from a …

BBBper: A Machine Learning-based Online Tool for Blood-Brain Barrier (BBB) Permeability Prediction

P Kumar, V Saini, D Gupta, PA Chawla… - CNS & Neurological …, 2024 - benthamdirect.com
Aims Neuronal disorders have affected more than 15% of the world's population, signifying
the importance of continued design and development of drugs that can cross the Blood …

Innovative strategies for the quantitative modeling of blood–brain barrier (BBB) permeability: harnessing the power of machine learning-based q-RASAR approach

V Kumar, A Banerjee, K Roy - Molecular Systems Design & …, 2024 - pubs.rsc.org
In the current research, we have unveiled an advanced technique termed the quantitative
read-across structure–activity relationship (q-RASAR) framework to harness the power of …