Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

R Akbar, H Bashour, P Rawat, PA Robert, E Smorodina… - MAbs, 2022 - Taylor & Francis
Although the therapeutic efficacy and commercial success of monoclonal antibodies (mAbs)
are tremendous, the design and discovery of new candidates remain a time and cost …

Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery

W Wilman, S Wróbel, W Bielska… - Briefings in …, 2022 - academic.oup.com
Antibodies are versatile molecular binders with an established and growing role as
therapeutics. Computational approaches to develo** and designing these molecules are …

In silico proof of principle of machine learning-based antibody design at unconstrained scale

R Akbar, PA Robert, CR Weber, M Widrich, R Frank… - MAbs, 2022 - Taylor & Francis
Generative machine learning (ML) has been postulated to become a major driver in the
computational design of antigen-specific monoclonal antibodies (mAb). However, efforts to …

Assessing developability early in the discovery process for novel biologics

ML Fernández-Quintero, A Ljungars, F Waibl, V Greiff… - MAbs, 2023 - Taylor & Francis
Beyond potency, a good developability profile is a key attribute of a biological drug.
Selecting and screening for such attributes early in the drug development process can save …

Toward real-world automated antibody design with combinatorial Bayesian optimization

A Khan, AI Cowen-Rivers, A Grosnit, PA Robert… - Cell Reports …, 2023 - cell.com
Antibodies are multimeric proteins capable of highly specific molecular recognition. The
complementarity determining region 3 of the antibody variable heavy chain (CDRH3) often …

[HTML][HTML] Applications of machine learning in antibody discovery, process development, manufacturing and formulation: current trends, challenges, and opportunities

TT Khuat, R Bassett, E Otte, A Grevis-James… - Computers & Chemical …, 2024 - Elsevier
While machine learning (ML) has made significant contributions to the biopharmaceutical
field, its applications are still in the early stages in terms of providing direct support for quality …

The RESP AI model accelerates the identification of tight-binding antibodies

J Parkinson, R Hard, W Wang - Nature communications, 2023 - nature.com
High-affinity antibodies are often identified through directed evolution, which may require
many iterations of mutagenesis and selection to find an optimal candidate. Deep learning …

The evolutionary and functional significance of germline immunoglobulin gene variation

M Pennell, OL Rodriguez, CT Watson, V Greiff - Trends in immunology, 2023 - cell.com
The recombination between immunoglobulin (IG) gene segments determines an individual's
naïve antibody repertoire and, consequently,(auto) antigen recognition. Emerging evidence …

Predicting antibody binders and generating synthetic antibodies using deep learning

YW Lim, AS Adler, DS Johnson - MAbs, 2022 - Taylor & Francis
The antibody drug field has continually sought improvements to methods for candidate
discovery and engineering. Historically, most such methods have been laboratory-based …

Leveraging artificial intelligence to expedite antibody design and enhance antibody–antigen interactions

DN Kim, AD McNaughton, N Kumar - Bioengineering, 2024 - mdpi.com
This perspective sheds light on the transformative impact of recent computational
advancements in the field of protein therapeutics, with a particular focus on the design and …