Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes

CR Clapier, J Iwasa, BR Cairns… - Nature reviews Molecular …, 2017 - nature.com
Cells utilize diverse ATP-dependent nucleosome-remodelling complexes to carry out
histone sliding, ejection or the incorporation of histone variants, suggesting that different …

Energy-driven genome regulation by ATP-dependent chromatin remodellers

S Eustermann, AB Patel, KP Hopfner, Y He… - … Reviews Molecular Cell …, 2024 - nature.com
The packaging of DNA into chromatin in eukaryotes regulates gene transcription, DNA
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …

Multiplexed profiling of single extracellular vesicles

K Lee, K Fraser, B Ghaddar, K Yang, E Kim, L Balaj… - ACS …, 2018 - ACS Publications
Extracellular vesicles (EV) are a family of cell-originating, membrane-enveloped
nanoparticles with diverse biological function, diagnostic potential, and therapeutic …

Post-translational modifications of histones that influence nucleosome dynamics

GD Bowman, MG Poirier - Chemical reviews, 2014 - ACS Publications
Nucleosomes are efficient DNA-packaging units. The fundamental protein unit of the
nucleosome is the histone dimer, a simple α-helical domain possessing a highly basic …

[HTML][HTML] Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes

GJ Narlikar, R Sundaramoorthy, T Owen-Hughes - Cell, 2013 - cell.com
Chromatin provides both a means to accommodate a large amount of genetic material in a
small space and a means to package the same genetic material in different chromatin states …

Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility

H Wu, EN Muñoz, LJ Hsieh, US Chio, MA Gourdet… - Science, 2023 - science.org
Unlike other chromatin remodelers, INO80 preferentially mobilizes hexasomes, which can
form during transcription. Why INO80 prefers hexasomes over nucleosomes remains …

Asymmetric unwrap** of nucleosomes under tension directed by DNA local flexibility

TTM Ngo, Q Zhang, R Zhou, JG Yodh, T Ha - Cell, 2015 - cell.com
Dynamics of the nucleosome and exposure of nucleosomal DNA play key roles in many
nuclear processes, but local dynamics of the nucleosome and its modulation by DNA …

Nucleosome density shapes kilobase-scale regulation by a mammalian chromatin remodeler

NJ Abdulhay, LJ Hsieh, CP McNally… - Nature Structural & …, 2023 - nature.com
Nearly all essential nuclear processes act on DNA packaged into arrays of nucleosomes.
However, our understanding of how these processes (for example, DNA replication, RNA …

Structure and regulation of the human INO80–nucleosome complex

R Ayala, O Willhoft, RJ Aramayo, M Wilkinson… - Nature, 2018 - nature.com
Access to DNA within nucleosomes is required for a variety of processes in cells including
transcription, replication and repair. Consequently, cells encode multiple systems that …

Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability

TTM Ngo, J Yoo, Q Dai, Q Zhang, C He… - Nature …, 2016 - nature.com
Cytosine can undergo modifications, forming 5-methylcytosine (5-mC) and its oxidized
products 5-hydroxymethylcytosine (5-hmC), 5-formylcytosine (5-fC) and 5-carboxylcytosine …