Heterosis and hybrid crop breeding: a multidisciplinary review

MR Labroo, AJ Studer, JE Rutkoski - Frontiers in Genetics, 2021 - frontiersin.org
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …

Epistasis and evolution: recent advances and an outlook for prediction

MS Johnson, G Reddy, MM Desai - BMC biology, 2023 - Springer
As organisms evolve, the effects of mutations change as a result of epistatic interactions with
other mutations accumulated along the line of descent. This can lead to shifts in adaptability …

ECNet is an evolutionary context-integrated deep learning framework for protein engineering

Y Luo, G Jiang, T Yu, Y Liu, L Vo, H Ding, Y Su… - Nature …, 2021 - nature.com
Abstract Machine learning has been increasingly used for protein engineering. However,
because the general sequence contexts they capture are not specific to the protein being …

The causes and consequences of genetic interactions (epistasis)

J Domingo, P Baeza-Centurion… - Annual review of …, 2019 - annualreviews.org
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …

Detecting epistasis in human complex traits

WH Wei, G Hemani, CS Haley - Nature Reviews Genetics, 2014 - nature.com
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …

Tissue-specific tumorigenesis: context matters

G Schneider, M Schmidt-Supprian, R Rad… - Nature Reviews …, 2017 - nature.com
How can we treat cancer more effectively? Traditionally, tumours from the same anatomical
site are treated as one tumour entity. This concept has been challenged by recent …

Genetic modifiers and rare Mendelian disease

KMTH Rahit, M Tarailo-Graovac - Genes, 2020 - mdpi.com
Despite advances in high-throughput sequencing that have revolutionized the discovery of
gene defects in rare Mendelian diseases, there are still gaps in translating individual …

Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape

C Lu, SU Jain, D Hoelper, D Bechet, RC Molden, L Ran… - Science, 2016 - science.org
Several types of pediatric cancers reportedly contain high-frequency missense mutations in
histone H3, yet the underlying oncogenic mechanism remains poorly characterized. Here …

Epistasis as the primary factor in molecular evolution

MS Breen, C Kemena, PK Vlasov, C Notredame… - Nature, 2012 - nature.com
The main forces directing long-term molecular evolution remain obscure. A sizable fraction
of amino-acid substitutions seem to be fixed by positive selection,,,, but it is unclear to what …

Idiosyncratic and dose-dependent epistasis drives variation in tomato fruit size

L Aguirre, A Hendelman, SF Hutton, DM McCandlish… - Science, 2023 - science.org
Epistasis between genes is traditionally studied with mutations that eliminate protein activity,
but most natural genetic variation is in cis-regulatory DNA and influences gene expression …