Heterosis and hybrid crop breeding: a multidisciplinary review
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …
Epistasis and evolution: recent advances and an outlook for prediction
As organisms evolve, the effects of mutations change as a result of epistatic interactions with
other mutations accumulated along the line of descent. This can lead to shifts in adaptability …
other mutations accumulated along the line of descent. This can lead to shifts in adaptability …
ECNet is an evolutionary context-integrated deep learning framework for protein engineering
Abstract Machine learning has been increasingly used for protein engineering. However,
because the general sequence contexts they capture are not specific to the protein being …
because the general sequence contexts they capture are not specific to the protein being …
The causes and consequences of genetic interactions (epistasis)
The same mutation can have different effects in different individuals. One important reason
for this is that the outcome of a mutation can depend on the genetic context in which it …
for this is that the outcome of a mutation can depend on the genetic context in which it …
Detecting epistasis in human complex traits
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …
of complex traits in humans, successfully shedding light on several aspects of genetic …
Tissue-specific tumorigenesis: context matters
How can we treat cancer more effectively? Traditionally, tumours from the same anatomical
site are treated as one tumour entity. This concept has been challenged by recent …
site are treated as one tumour entity. This concept has been challenged by recent …
Genetic modifiers and rare Mendelian disease
Despite advances in high-throughput sequencing that have revolutionized the discovery of
gene defects in rare Mendelian diseases, there are still gaps in translating individual …
gene defects in rare Mendelian diseases, there are still gaps in translating individual …
Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape
Several types of pediatric cancers reportedly contain high-frequency missense mutations in
histone H3, yet the underlying oncogenic mechanism remains poorly characterized. Here …
histone H3, yet the underlying oncogenic mechanism remains poorly characterized. Here …
Epistasis as the primary factor in molecular evolution
The main forces directing long-term molecular evolution remain obscure. A sizable fraction
of amino-acid substitutions seem to be fixed by positive selection,,,, but it is unclear to what …
of amino-acid substitutions seem to be fixed by positive selection,,,, but it is unclear to what …
Idiosyncratic and dose-dependent epistasis drives variation in tomato fruit size
Epistasis between genes is traditionally studied with mutations that eliminate protein activity,
but most natural genetic variation is in cis-regulatory DNA and influences gene expression …
but most natural genetic variation is in cis-regulatory DNA and influences gene expression …