Approaches to dimensionality reduction in proteomic biomarker studies

M Hilario, A Kalousis - Briefings in bioinformatics, 2008 - academic.oup.com
Mass-spectra based proteomic profiles have received widespread attention as potential
tools for biomarker discovery and early disease diagnosis. A major data-analytical problem …

Gene selection from microarray gene expression data for classification of cancer subgroups employing PSO and adaptive K-nearest neighborhood technique

S Kar, KD Sharma, M Maitra - Expert Systems with Applications, 2015 - Elsevier
These days, microarray gene expression data are playing an essential role in cancer
classifications. However, due to the availability of small number of effective samples …

Random subspace method for multivariate feature selection

C Lai, MJT Reinders, L Wessels - Pattern recognition letters, 2006 - Elsevier
In a growing number of domains data captured encapsulates as many features as possible.
This poses a challenge to classical pattern recognition techniques, since the number of …

Prostate cancer localization with multispectral MRI using cost-sensitive support vector machines and conditional random fields

Y Artan, MA Haider, DL Langer… - … on Image Processing, 2010 - ieeexplore.ieee.org
Prostate cancer is a leading cause of cancer death for men in the United States. Fortunately,
the survival rate for early diagnosed patients is relatively high. Therefore, in vivo imaging …

Changes in gene expression associated with response to neoadjuvant chemotherapy in breast cancer

J Hannemann, HM Oosterkamp, CAJ Bosch… - Journal of clinical …, 2005 - ascopubs.org
Purpose At present, clinically useful markers predicting response of primary breast
carcinomas to either doxorubicin-cyclophosphamide (AC) or doxorubicin-docetaxel (AD) are …

MGRFE: multilayer recursive feature elimination based on an embedded genetic algorithm for cancer classification

C Peng, X Wu, W Yuan, X Zhang… - … /ACM transactions on …, 2019 - ieeexplore.ieee.org
Microarray gene expression data have become a topic of great interest for cancer
classification and for further research in the field of bioinformatics. Nonetheless, due to the …

A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets

C Lai, MJT Reinders, LJ van't Veer, LFA Wessels - BMC bioinformatics, 2006 - Springer
Background Gene selection is an important step when building predictors of disease state
based on gene expression data. Gene selection generally improves performance and …

Cancer classification from gene expression data by NPPC ensemble

S Ghorai, A Mukherjee, S Sengupta… - IEEE/ACM Transactions …, 2010 - ieeexplore.ieee.org
The most important application of microarray in gene expression analysis is to classify the
unknown tissue samples according to their gene expression levels with the help of known …

Dissimilarity-based ensembles for multiple instance learning

V Cheplygina, DMJ Tax, M Loog - IEEE transactions on neural …, 2015 - ieeexplore.ieee.org
In multiple instance learning, objects are sets (bags) of feature vectors (instances) rather
than individual feature vectors. In this paper, we address the problem of how these bags can …

Selecting useful groups of features in a connectionist framework

D Chakraborty, NR Pal - IEEE transactions on neural networks, 2008 - ieeexplore.ieee.org
Suppose for a given classification or function approximation (FA) problem data are collected
using sensors. From the output of the th sensor, features are extracted, thereby generating …