Agnostic sequencing for detection of viral pathogens

NPG Gauthier, SD Chorlton, M Krajden… - Clinical microbiology …, 2023 - journals.asm.org
The advent of next-generation sequencing (NGS) technologies has expanded our ability to
detect and analyze microbial genomes and has yielded novel molecular approaches for …

[HTML][HTML] SARS-CoV-2 variants identification: overview of molecular existing methods

G Berno, L Fabeni, G Matusali, CEM Gruber, M Rueca… - Pathogens, 2022 - mdpi.com
Since the beginning of COVID-19 pandemic the Real Time sharing of genome sequences of
circulating virus supported the diagnostics and surveillance of SARS-CoV-2 and its …

COVID-19 variant detection with a high-fidelity CRISPR-Cas12 enzyme

CL Fasching, V Servellita, B McKay… - Journal of Clinical …, 2022 - journals.asm.org
Laboratory tests for the accurate and rapid identification of SARS-CoV-2 variants can
potentially guide the treatment of COVID-19 patients and inform infection control and public …

Household transmission of SARS-CoV-2 from humans to pets, Washington and Idaho, USA

J Meisner, TV Baszler, KE Kuehl… - Emerging Infectious …, 2022 - pmc.ncbi.nlm.nih.gov
SARS-CoV-2 likely emerged from an animal reservoir. However, the frequency of and risk
factors for interspecies transmission remain unclear. We conducted a community-based …

A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2

EC Carbo, K Mourik, SA Boers, BO Munnink… - European Journal of …, 2023 - Springer
Rapid identification of the rise and spread of severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2) variants of concern remains critical for monitoring of the efficacy of …

Development and validation of a high throughput SARS-CoV-2 whole genome sequencing workflow in a clinical laboratory

SH Rosenthal, A Gerasimova, R Ruiz-Vega… - Scientific Reports, 2022 - nature.com
Monitoring new mutations in SARS-CoV-2 provides crucial information for identifying
diagnostic and therapeutic targets and important insights to achieve a more effective COVID …

A Fast and Sensitive One-Tube SARS-CoV-2 Detection Platform Based on RTX-PCR and Pyrococcus furiosus Argonaute

R Han, F Wang, W Chen, L Ma - Biosensors, 2024 - mdpi.com
Since SARS-CoV-2 is a highly transmissible virus, alternative reliable, fast, and cost-
effective methods are still needed to prevent virus spread that can be applied in the …

SARS-CoV-2 vaccine breakthrough by Omicron and Delta variants, New York, USA

AC Keyel, A Russell, J Plitnick… - Emerging infectious …, 2022 - pmc.ncbi.nlm.nih.gov
Recently emerged SARS-CoV-2 variants have greater potential than earlier variants to
cause vaccine breakthrough infections. During emergence of the Delta and Omicron …

[HTML][HTML] Honey as an Adjuvant in the Treatment of COVID-19 Infection: A Review

S Soares, M Bornet, C Grosso, MJ Ramalhosa… - Applied Sciences, 2022 - mdpi.com
Since ancestor times, honey has been used to promote human health due to its medicinal,
and nutritious properties, mainly due to bioactive compounds present, such as phenolic …

Investigating the extent of primer dropout in SARS-CoV-2 genome sequences during the early circulation of delta variants

L Borcard, S Gempeler, MA Terrazos Miani… - Frontiers in …, 2022 - frontiersin.org
The SARS-CoV-2 Delta variant, corresponding to the Pangolin lineage B. 1.617. 2, was first
detected in India in July 2020 and rapidly became dominant worldwide. The ARTIC v3 …