Epigenetic regulation in the tumor microenvironment: molecular mechanisms and therapeutic targets

J Yang, J Xu, W Wang, B Zhang, X Yu… - Signal transduction and …, 2023 - nature.com
Over decades, researchers have focused on the epigenetic control of DNA-templated
processes. Histone modification, DNA methylation, chromatin remodeling, RNA modification …

RNA modifications: importance in immune cell biology and related diseases

L Cui, R Ma, J Cai, C Guo, Z Chen, L Yao… - Signal transduction and …, 2022 - nature.com
RNA modifications have become hot topics recently. By influencing RNA processes,
including generation, transportation, function, and metabolization, they act as critical …

RNA modifications in cellular metabolism: implications for metabolism-targeted therapy and immunotherapy

WW Liu, SQ Zheng, T Li, YF Fei, C Wang… - Signal transduction and …, 2024 - nature.com
Cellular metabolism is an intricate network satisfying bioenergetic and biosynthesis
requirements of cells. Relevant studies have been constantly making inroads in our …

8-Oxoguanine: from oxidative damage to epigenetic and epitranscriptional modification

JY Hahm, J Park, ES Jang, SW Chi - Experimental & molecular …, 2022 - nature.com
In pathophysiology, reactive oxygen species control diverse cellular phenotypes by
oxidizing biomolecules. Among these, the guanine base in nucleic acids is the most …

Structural basis of regulated m7G tRNA modification by METTL1–WDR4

J Li, L Wang, Q Hahn, RP Nowak, T Viennet… - Nature, 2023 - nature.com
Chemical modifications of RNA have key roles in many biological processes,–. N 7-
methylguanosine (m7G) is required for integrity and stability of a large subset of tRNAs …

The life and times of a tRNA

EM Phizicky, AK Hopper - Rna, 2023 - rnajournal.cshlp.org
The study of eukaryotic tRNA processing has given rise to an explosion of new information
and insights in the last several years. We now have unprecedented knowledge of each step …

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

PP Chan, TM Lowe - Nucleic acids research, 2016 - academic.oup.com
Transfer RNAs represent the largest, most ubiquitous class of non-protein coding RNA
genes found in all living organisms. The tRNAscan-SE search tool has become the de facto …

Transfer RNAs as dynamic and critical regulators of cancer progression

AM Pinzaru, SF Tavazoie - Nature Reviews Cancer, 2023 - nature.com
Transfer RNAs (tRNAs) have been historically viewed as non-dynamic adaptors that decode
the genetic code into proteins. Recent work has uncovered dynamic regulatory roles for …

Biosynthesis and function of posttranscriptional modifications of transfer RNAs

B El Yacoubi, M Bailly… - Annual review of …, 2012 - annualreviews.org
Posttranscriptional modifications of transfer RNAs (tRNAs) are critical for all core aspects of
tRNA function, such as folding, stability, and decoding. Most tRNA modifications were …

XRN 5′→ 3′ exoribonucleases: structure, mechanisms and functions

VK Nagarajan, CI Jones, SF Newbury… - Biochimica et Biophysica …, 2013 - Elsevier
The XRN family of 5′→ 3′ exoribonucleases is critical for ensuring the fidelity of cellular
RNA turnover in eukaryotes. Highly conserved across species, the family is typically …