A survey on annotation tools for the biomedical literature

M Neves, U Leser - Briefings in bioinformatics, 2014‏ - academic.oup.com
New approaches to biomedical text mining crucially depend on the existence of
comprehensive annotated corpora. Such corpora, commonly called gold standards, are …

Event-based text mining for biology and functional genomics

S Ananiadou, P Thompson, R Nawaz… - Briefings in …, 2015‏ - academic.oup.com
The assessment of genome function requires a map** between genome-derived entities
and biochemical reactions, and the biomedical literature represents a rich source of …

DeepEventMine: end-to-end neural nested event extraction from biomedical texts

HL Trieu, TT Tran, KNA Duong, A Nguyen… - …, 2020‏ - academic.oup.com
Motivation Recent neural approaches on event extraction from text mainly focus on flat
events in general domain, while there are less attempts to detect nested and overlap** …

[كتاب][B] Healthcare data analytics

CK Reddy, CC Aggarwal - 2015‏ - books.google.com
Supplying a comprehensive overview of healthcare analytics research, Healthcare Data
Analytics provides an understanding of the analytical techniques currently available to solve …

Event extraction across multiple levels of biological organization

S Pyysalo, T Ohta, M Miwa, HC Cho, J Tsujii… - …, 2012‏ - academic.oup.com
Motivation: Event extraction using expressive structured representations has been a
significant focus of recent efforts in biomedical information extraction. However, event …

Overview of the cancer genetics and pathway curation tasks of bionlp shared task 2013

S Pyysalo, T Ohta, R Rak, A Rowley, HW Chun… - BMC …, 2015‏ - Springer
Background Since their introduction in 2009, the BioNLP Shared Task events have been
instrumental in advancing the development of methods and resources for the automatic …

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

S Pyysalo, T Ohta, R Rak, D Sullivan, C Mao… - BMC …, 2012‏ - Springer
We present the preparation, resources, results and analysis of three tasks of the BioNLP
Shared Task 2011: the main tasks on Infectious Diseases (ID) and Epigenetics and Post …

Large-scale event extraction from literature with multi-level gene normalization

S Van Landeghem, J Björne, CH Wei, K Hakala… - PloS one, 2013‏ - journals.plos.org
Text mining for the life sciences aims to aid database curation, knowledge summarization
and information retrieval through the automated processing of biomedical texts. To provide …

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

M Miwa, P Thompson, S Ananiadou - Bioinformatics, 2012‏ - academic.oup.com
Motivation: In recent years, several biomedical event extraction (EE) systems have been
developed. However, the nature of the annotated training corpora, as well as the training …

[HTML][HTML] Transfer learning for named entity recognition in financial and biomedical documents

S Francis, J Van Landeghem, MF Moens - Information, 2019‏ - mdpi.com
Recent deep learning approaches have shown promising results for named entity
recognition (NER). A reasonable assumption for training robust deep learning models is that …