Simulation studies of amyloidogenic polypeptides and their aggregates

IM Ilie, A Caflisch - Chemical reviews, 2019 - ACS Publications
Amyloids, fibrillar assembly of (poly) peptide chains, are associated with neurodegenerative
illnesses such as Alzheimer's and Parkinson's diseases, for which there are no cures. The …

Alzheimer's disease: How metal ions define β-amyloid function

KP Kepp - Coordination Chemistry Reviews, 2017 - Elsevier
Alzheimer's disease is increasingly recognized to be linked to the function and status of
metal ions, and recently, the amyloid hypothesis has been strongly intertwined with the …

Molecular structure of Cu (II)-bound amyloid-β monomer implicated in inhibition of peptide self-assembly in Alzheimer's disease

A Abelein, S Ciofi-Baffoni, C Mörman, R Kumar… - JACS Au, 2022 - ACS Publications
Metal ions, such as copper and zinc ions, have been shown to strongly modulate the self-
assembly of the amyloid-β (Aβ) peptide into insoluble fibrils, and elevated concentrations of …

The liquid structure of elastin

S Rauscher, R Pomès - Elife, 2017 - elifesciences.org
The protein elastin imparts extensibility, elastic recoil, and resilience to tissues including
arterial walls, skin, lung alveoli, and the uterus. Elastin and elastin-like peptides are …

Effects of All-Atom Molecular Mechanics Force Fields on Amyloid Peptide Assembly: The Case of Aβ16–22 Dimer

VH Man, X He, P Derreumaux, B Ji… - Journal of chemical …, 2019 - ACS Publications
We investigated the effects of 17 widely used atomistic molecular mechanics force fields
(MMFFs) on the structures and kinetics of amyloid peptide assembly. To this end, we …

Different force fields give rise to different amyloid aggregation pathways in molecular dynamics simulations

S Samantray, F Yin, B Kav… - Journal of chemical …, 2020 - ACS Publications
The progress toward understanding the molecular basis of Alzheimers's disease is strongly
connected to elucidating the early aggregation events of the amyloid-β (Aβ) peptide …

Comparison of force fields for Alzheimer's A: A case study for intrinsically disordered proteins

M Carballo‐Pacheco, B Strodel - Protein science, 2017 - Wiley Online Library
Intrinsically disordered proteins are essential for biological processes such as cell
signalling, but are also associated to devastating diseases including Alzheimer's disease …

Thermodynamics and kinetics of the amyloid-β peptide revealed by Markov state models based on MD data in agreement with experiment

A Paul, S Samantray, M Anteghini, M Khaled… - Chemical …, 2021 - pubs.rsc.org
The amlyoid-β peptide (Aβ) is closely linked to the development of Alzheimer's disease.
Molecular dynamics (MD) simulations have become an indispensable tool for studying the …

Molecular mechanisms of resveratrol and EGCG in the inhibition of Aβ 42 aggregation and disruption of Aβ 42 protofibril: Similarities and differences

F Li, C Zhan, X Dong, G Wei - Physical Chemistry Chemical Physics, 2021 - pubs.rsc.org
The aggregation of amyloid-β protein (Aβ) into fibrillary deposits is implicated in Alzheimer's
disease (AD), and inhibiting Aβ aggregation and clearing Aβ fibrils are considered as …

Alzheimer's disease due to loss of function: A new synthesis of the available data

KP Kepp - Progress in neurobiology, 2016 - Elsevier
Alzheimer's Disease (AD) is a highly complex disease involving a broad range of clinical,
cellular, and biochemical manifestations that are currently not understood in combination …