Physicochemical mechanisms of protein regulation by phosphorylation

H Nishi, A Shaytan, AR Panchenko - Frontiers in genetics, 2014 - frontiersin.org
Phosphorylation offers a dynamic way to regulate protein activity and subcellular
localization, which is achieved through its reversibility and fast kinetics. Adding or removing …

The chromatin fiber: multiscale problems and approaches

G Ozer, A Luque, T Schlick - Current opinion in structural biology, 2015 - Elsevier
The structure of chromatin, affected by many factors from DNA linker lengths to
posttranslational modifications, is crucial to the regulation of eukaryotic cells. Combined …

The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome

EA Morrison, S Bowerman, KL Sylvers… - Elife, 2018 - elifesciences.org
Histone tails harbor a plethora of post-translational modifications that direct the function of
chromatin regulators, which recognize them through effector domains. Effector …

Chromatin unfolding by epigenetic modifications explained by dramatic impairment of internucleosome interactions: a multiscale computational study

R Collepardo-Guevara, G Portella… - Journal of the …, 2015 - ACS Publications
Histone tails and their epigenetic modifications play crucial roles in gene expression
regulation by altering the architecture of chromatin. However, the structural mechanisms by …

Resveratrol serves as a protein-substrate interaction stabilizer in human SIRT1 activation

X Hou, D Rooklin, H Fang, Y Zhang - Scientific Reports, 2016 - nature.com
Resveratrol is a natural compound found in red wine that has been suggested to exert its
potential health benefit through the activation of SIRT1, a crucial member of the mammalian …

EZH2-induced lysine K362 methylation enhances TMPRSS2-ERG oncogenic activity in prostate cancer

M Zoma, L Curti, D Shinde, D Albino, A Mitra… - Nature …, 2021 - nature.com
The TMPRSS2-ERG gene fusion is the most frequent alteration observed in human prostate
cancer. However, its role in disease progression is still unclear. In this study, we uncover an …

SUMOylation regulates LKB1 localization and its oncogenic activity in liver cancer

I Zubiete-Franco, JL García-Rodríguez… - …, 2019 - thelancet.com
Background: Even though liver kinase B1 (LKB1) is usually described as a tumor suppressor
in a wide variety of tissues, it has been shown that LKB1 aberrant expression is associated …

Conformational dynamics of the nucleosomal histone H2B tails revealed by molecular dynamics simulations

R Patel, A Onyema, PK Tang… - Journal of Chemical …, 2024 - ACS Publications
Epigenetic modifications of histone N-terminal tails play a critical role in regulating the
chromatin structure and biological processes such as transcription and DNA repair. One of …

Mechanism of inhibition of the human sirtuin enzyme SIRT3 by nicotinamide: computational and experimental studies

X Guan, P Lin, E Knoll, R Chakrabarti - PloS one, 2014 - journals.plos.org
Sirtuins are key regulators of many cellular functions including cell growth, apoptosis,
metabolism, and genetic control of age-related diseases. Sirtuins are themselves regulated …