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A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
The complex genetic basis and multilayered regulatory control of yeast pseudohyphal growth
A Kumar - Annual Review of Genetics, 2021 - annualreviews.org
Eukaryotic cells are exquisitely responsive to external and internal cues, achieving precise
control of seemingly diverse growth processes through a complex interplay of regulatory …
control of seemingly diverse growth processes through a complex interplay of regulatory …
[KSIĄŻKA][B] Mechanisms of morphogenesis
JA Davies - 2023 - books.google.com
Mechanisms of Morphogenesis, Third Edition offers a bottom-up discussion of mechanisms
of cell and tissue morphogenesis in a diverse array of organisms, including prokaryotes …
of cell and tissue morphogenesis in a diverse array of organisms, including prokaryotes …
An off-lattice discrete model to characterise filamentous yeast colony morphology
We combine an off-lattice agent-based mathematical model and experimentation to explore
filamentous growth of a yeast colony. Under environmental stress, Saccharomyces …
filamentous growth of a yeast colony. Under environmental stress, Saccharomyces …
Collective colony growth is optimized by branching pattern formation in Pseudomonas aeruginosa
Branching pattern formation is common in many microbes. Extensive studies have focused
on addressing how such patterns emerge from local cell–cell and cell–environment …
on addressing how such patterns emerge from local cell–cell and cell–environment …
Morphology and size of bacterial colonies control anoxic microenvironment formation in porous media
Bacterial metabolisms using electron acceptors other than oxygen (eg, methanogenesis and
fermentation) largely contribute to element cycling and natural contaminant attenuation …
fermentation) largely contribute to element cycling and natural contaminant attenuation …
Integrative analysis of yeast colony growth
T Gaizer, J Juhász, B Pillér, H Szakadáti… - Communications …, 2024 - nature.com
Yeast colonies are routinely grown on agar plates in everyday experimental settings to
understand basic molecular processes, produce novel drugs, improve health, and so on …
understand basic molecular processes, produce novel drugs, improve health, and so on …
Nutrient-limited growth with non-linear cell diffusion as a mechanism for floral pattern formation in yeast biofilms
Previous experiments have shown that mature yeast mat biofilms develop a floral
morphology, characterised by the formation of petal-like structures. In this work, we …
morphology, characterised by the formation of petal-like structures. In this work, we …
Contribution of the genomic and nutritional differentiation to the spatial distribution of bacterial colonies
K Hitomi, J Weng, BW Ying - Frontiers in Microbiology, 2022 - frontiersin.org
Colony growth is a common phenomenon of structured populations dispersed in nature;
nevertheless, studies on the spatial distribution of colonies are largely insufficient. Here, we …
nevertheless, studies on the spatial distribution of colonies are largely insufficient. Here, we …
A thin-film extensional flow model for biofilm expansion by sliding motility
In the presence of glycoproteins, bacterial and yeast biofilms are hypothesized to expand by
sliding motility. This involves a sheet of cells spreading as a unit, facilitated by cell …
sliding motility. This involves a sheet of cells spreading as a unit, facilitated by cell …