PyBioNetFit and the biological property specification language

ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu… - IScience, 2019‏ - cell.com
In systems biology modeling, important steps include model parameterization, uncertainty
quantification, and evaluation of agreement with experimental observations. To help …

Bayesian inference using qualitative observations of underlying continuous variables

ED Mitra, WS Hlavacek - Bioinformatics, 2020‏ - academic.oup.com
Motivation Recent work has demonstrated the feasibility of using non-numerical, qualitative
data to parameterize mathematical models. However, uncertainty quantification (UQ) of such …

Bayesian uncertainty quantification for systems biology models parameterized using qualitative data

ED Mitra, WS Hlavacek - arxiv preprint arxiv:1909.00072, 2019‏ - arxiv.org
Motivation: Recent work has demonstrated the feasibility of using non-numerical, qualitative
data to parameterize mathematical models. However, uncertainty quantification (UQ) of such …