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RNA sequencing for research and diagnostics in clinical oncology
Molecular diagnostics is becoming one of the major drivers of personalized oncology. With
hundreds of different approved anticancer drugs and regimens of their administration …
hundreds of different approved anticancer drugs and regimens of their administration …
Targeted inhibitors of EGFR: structure, biology, biomarkers, and clinical applications
N Shaban, D Kamashev, A Emelianova, A Buzdin - Cells, 2023 - mdpi.com
Members of the EGFR family of tyrosine kinase receptors are major regulators of cellular
proliferation, differentiation, and survival. In humans, abnormal activation of EGFR is …
proliferation, differentiation, and survival. In humans, abnormal activation of EGFR is …
Algorithmic annotation of functional roles for components of 3,044 human molecular pathways
Current methods of high-throughput molecular and genomic analyses enabled to
reconstruct thousands of human molecular pathways. Knowledge of molecular pathways …
reconstruct thousands of human molecular pathways. Knowledge of molecular pathways …
Intratumoral heterogeneity and longitudinal changes in gene expression predict differential drug sensitivity in newly diagnosed and recurrent glioblastoma
EL Kim, M Sorokin, SR Kantelhardt, D Kalasauskas… - Cancers, 2020 - mdpi.com
Background: Inevitable recurrence after radiochemotherapy is the major problem in the
treatment of glioblastoma, the most prevalent type of adult brain malignancy. Glioblastomas …
treatment of glioblastoma, the most prevalent type of adult brain malignancy. Glioblastomas …
RNA sequencing profiles and diagnostic signatures linked with response to ramucirumab in gastric cancer
M Sorokin, E Poddubskaya… - Molecular …, 2020 - molecularcasestudies.cshlp.org
Gastric cancer (GC) is the fifth-ranked cancer type by associated mortality. The proportion of
early diagnosis is low, and most patients are diagnosed at the advanced stages. First-line …
early diagnosis is low, and most patients are diagnosed at the advanced stages. First-line …
Bioinformatic and clinical experimental assay uncovers resistance and susceptibility mechanisms of human glioblastomas to temozolomide and identifies new …
A Modestov, M Zolotovskaia… - … in medical oncology, 2024 - journals.sagepub.com
Background: Glioblastoma (GBM) is the most aggressive and lethal central nervous system
(CNS) tumor. The treatment strategy is mainly surgery and/or radiation therapy, both …
(CNS) tumor. The treatment strategy is mainly surgery and/or radiation therapy, both …
Transcriptomic harmonization as the way for suppressing cross-platform bias and batch effect
(1) Background: Emergence of methods interrogating gene expression at high throughput
gave birth to quantitative transcriptomics, but also posed a question of inter-comparison of …
gave birth to quantitative transcriptomics, but also posed a question of inter-comparison of …
Using proteomic and transcriptomic data to assess activation of intracellular molecular pathways
Abstract Analysis of molecular pathway activation is the recent instrument that helps to
quantize activities of various intracellular signaling, structural, DNA synthesis and repair …
quantize activities of various intracellular signaling, structural, DNA synthesis and repair …
Uniformly shaped harmonization combines human transcriptomic data from different platforms while retaining their biological properties and differential gene …
Introduction: Co-normalization of RNA profiles obtained using different experimental
platforms and protocols opens avenue for comprehensive comparison of relevant features …
platforms and protocols opens avenue for comprehensive comparison of relevant features …
Personalized targeted therapy prescription in colorectal cancer using algorithmic analysis of RNA sequencing data
M Sorokin, M Zolotovskaia, D Nikitin, M Suntsova… - BMC cancer, 2022 - Springer
Background: Overall survival of advanced colorectal cancer (CRC) patients remains poor,
and gene expression analysis could potentially complement detection of clinically relevant …
and gene expression analysis could potentially complement detection of clinically relevant …