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Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView
Molecular simulation has become an integral part of the DNA/RNA nanotechnology
research pipeline. In particular, understanding the dynamics of structures and single …
research pipeline. In particular, understanding the dynamics of structures and single …
Designer nanomaterials through programmable assembly
Nanoparticles have long been recognized for their unique properties, leading to exciting
potential applications across optics, electronics, magnetism, and catalysis. These specific …
potential applications across optics, electronics, magnetism, and catalysis. These specific …
Prediction of DNA origami shape using graph neural network
Unlike proteins, which have a wealth of validated structural data, experimentally or
computationally validated DNA origami datasets are limited. Here we present a graph neural …
computationally validated DNA origami datasets are limited. Here we present a graph neural …
A DNA turbine powered by a transmembrane potential across a nanopore
Rotary motors play key roles in energy transduction, from macroscale windmills to
nanoscale turbines such as ATP synthase in cells. Despite our abilities to construct engines …
nanoscale turbines such as ATP synthase in cells. Despite our abilities to construct engines …
3D RNA-scaffolded wireframe origami
Hybrid RNA: DNA origami, in which a long RNA scaffold strand folds into a target
nanostructure via thermal annealing with complementary DNA oligos, has only been …
nanostructure via thermal annealing with complementary DNA oligos, has only been …
Designing Rigid DNA Origami Templates for Molecular Visualization Using Cryo-EM
A Khoshouei, G Kempf, V Mykhailiuk, JM Griessing… - Nano Letters, 2024 - ACS Publications
DNA origami, a method for constructing nanostructures from DNA, offers potential for diverse
scientific and technological applications due to its ability to integrate various molecular …
scientific and technological applications due to its ability to integrate various molecular …
Geometrically programmed self-limited assembly of tubules using DNA origami colloids
Self-assembly is one of the most promising strategies for making functional materials at the
nanoscale, yet new design principles for making self-limiting architectures, rather than …
nanoscale, yet new design principles for making self-limiting architectures, rather than …
A computational model for structural dynamics and reconfiguration of DNA assemblies
Recent advances in constructing a structured DNA assembly whose configuration can be
dynamically changed in response to external stimuli have demanded the development of an …
dynamically changed in response to external stimuli have demanded the development of an …
DNA origami traps for large viruses
Virus-envelo** macromolecular shells or tilings can prevent viruses from entering cells.
Here, we describe the design and assembly of a cone-shaped DNA origami higher-order …
Here, we describe the design and assembly of a cone-shaped DNA origami higher-order …
Structure and dynamics of an archetypal DNA nanoarchitecture revealed via cryo-EM and molecular dynamics simulations
DNA can be folded into rationally designed, unique, and functional materials. To fully realise
the potential of these DNA materials, a fundamental understanding of their structure and …
the potential of these DNA materials, a fundamental understanding of their structure and …