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Assessing developability early in the discovery process for novel biologics
Beyond potency, a good developability profile is a key attribute of a biological drug.
Selecting and screening for such attributes early in the drug development process can save …
Selecting and screening for such attributes early in the drug development process can save …
[HTML][HTML] Recent progress in antibody epitope prediction
X Zeng, G Bai, C Sun, B Ma - Antibodies, 2023 - mdpi.com
Recent progress in epitope prediction has shown promising results in the development of
vaccines and therapeutics against various diseases. However, the overall accuracy and …
vaccines and therapeutics against various diseases. However, the overall accuracy and …
Antibody structure prediction using interpretable deep learning
Therapeutic antibodies make up a rapidly growing segment of the biologics market.
However, rational design of antibodies is hindered by reliance on experimental methods for …
However, rational design of antibodies is hindered by reliance on experimental methods for …
The role of force fields and water models in protein folding and unfolding dynamics
Protein folding is a fascinating, not fully understood phenomenon in biology. Molecular
dynamics (MD) simulations are an invaluable tool to study conformational changes in …
dynamics (MD) simulations are an invaluable tool to study conformational changes in …
Challenges in antibody structure prediction
Advances in structural biology and the exponential increase in the amount of high-quality
experimental structural data available in the Protein Data Bank has motivated numerous …
experimental structural data available in the Protein Data Bank has motivated numerous …
Leveraging artificial intelligence to expedite antibody design and enhance antibody–antigen interactions
This perspective sheds light on the transformative impact of recent computational
advancements in the field of protein therapeutics, with a particular focus on the design and …
advancements in the field of protein therapeutics, with a particular focus on the design and …
Antibodies exhibit multiple paratope states influencing VH–VL domain orientations
In the last decades, antibodies have emerged as one of the most important and successful
classes of biopharmaceuticals. The highest variability and diversity of an antibody is …
classes of biopharmaceuticals. The highest variability and diversity of an antibody is …
Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2
Predicting the structure of antibody-antigen complexes has tremendous value in biomedical
research but unfortunately suffers from a poor performance in real-life applications …
research but unfortunately suffers from a poor performance in real-life applications …
Defining and studying B cell receptor and TCR interactions
Abstract BCRs (Abs) and TCRs (or adaptive immune receptors [AIRs]) are the means by
which the adaptive immune system recognizes foreign and self-antigens, playing an integral …
which the adaptive immune system recognizes foreign and self-antigens, playing an integral …
Local and global rigidification upon antibody affinity maturation
During the affinity maturation process the immune system produces antibodies with higher
specificity and activity through various rounds of somatic hypermutations in response to an …
specificity and activity through various rounds of somatic hypermutations in response to an …