Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers

L Wratten, A Wilm, J Göke - Nature methods, 2021 - nature.com
The rapid growth of high-throughput technologies has transformed biomedical research.
With the increasing amount and complexity of data, scalability and reproducibility have …

[HTML][HTML] The role of metadata in reproducible computational research

J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg - Patterns, 2021 - cell.com
Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …

The openCARP simulation environment for cardiac electrophysiology

G Plank, A Loewe, A Neic, C Augustin… - Computer methods and …, 2021 - Elsevier
Abstract Background and Objective: Cardiac electrophysiology is a medical specialty with a
long and rich tradition of computational modeling. Nevertheless, no community standard for …

[HTML][HTML] preCICE v2: A sustainable and user-friendly coupling library

G Chourdakis, K Davis, B Rodenberg… - Open Research …, 2022 - ncbi.nlm.nih.gov
preCICE v2: A sustainable and user-friendly coupling library - PMC Back to Top Skip to main
content NIH NLM Logo Access keys NCBI Homepage MyNCBI Homepage Main Content Main …

[KİTAP][B] Multiphysics phase-field fracture: modeling, adaptive discretizations, and solvers

T Wick - 2020 - books.google.com
This monograph is centered on mathematical modeling, innovative numerical algorithms
and adaptive concepts to deal with fracture phenomena in multiphysics. State-of-the-art …

Bayesian inversion with open-source codes for various one-dimensional model problems in computational mechanics

N Noii, A Khodadadian, J Ulloa, F Aldakheel… - … Methods in Engineering, 2022 - Springer
The complexity of many problems in computational mechanics calls for reliable
programming codes and accurate simulation systems. Typically, simulation responses …

A survey of the state of the practice for research software in the United States

JC Carver, N Weber, K Ram, S Gesing… - PeerJ Computer …, 2022 - peerj.com
Research software is a critical component of contemporary scholarship. Yet, most research
software is developed and managed in ways that are at odds with its long-term …

pyCSEP: a Python toolkit for earthquake forecast developers

WH Savran, JA Bayona, P Iturrieta… - Seismological …, 2022 - pubs.geoscienceworld.org
Abstract The Collaboratory for the Study of Earthquake Predictability (CSEP) is an open and
global community whose mission is to accelerate earthquake predictability research through …

An Efficient FEniCS implementation for coupling lithium-ion battery charge/discharge processes with fatigue phase-field fracture

N Noii, D Milijasevic, A Khodadadian, T Wick - Engineering Fracture …, 2024 - Elsevier
Accurately predicting the fatigue failure of lithium-ion battery electrode particles during
charge–discharge cycles is essential for enhancing their structural reliability and lifespan …

Practices of linked open data in archaeology and their realisation in Wikidata

SC Schmidt, F Thiery, M Trognitz - Digital, 2022 - mdpi.com
In this paper, we introduce Linked Open Data (LOD) in the archaeological domain as a
means to connect dispersed data sources and enable cross-querying. The technology …