[HTML][HTML] Whole genome sequencing options for bacterial strain ty** and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene …

AC Schürch, S Arredondo-Alonso, RJL Willems… - Clinical microbiology …, 2018 - Elsevier
Background Whole genome sequence (WGS)-based strain ty** finds increasing use in the
epidemiologic analysis of bacterial pathogens in both public health as well as more …

Ty** methods based on whole genome sequencing data

L Uelze, J Grützke, M Borowiak, JA Hammerl… - One Health …, 2020 - Springer
Whole genome sequencing (WGS) of foodborne pathogens has become an effective
method for investigating the information contained in the genome sequence of bacterial …

Emergence of methicillin resistance predates the clinical use of antibiotics

J Larsen, CL Raisen, X Ba, NJ Sadgrove… - Nature, 2022 - nature.com
The discovery of antibiotics more than 80 years ago has led to considerable improvements
in human and animal health. Although antibiotic resistance in environmental bacteria is …

SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination

JAS Castruita, UV Schneider, S Mollerup… - Apmis, 2023 - Wiley Online Library
In Denmark, vaccination against Severe Acute Respiratory Syndrome Corona Virus 2 (SARS‐
CoV‐2) has been with the Pfizer‐BioNTech (BTN162b2) or the Moderna (mRNA‐1273) …

Multiple introductions and subsequent transmission of multidrug-resistant Candida auris in the USA: a molecular epidemiological survey

NA Chow, L Gade, SV Tsay, K Forsberg… - The Lancet Infectious …, 2018 - thelancet.com
Background Transmission of multidrug-resistant Candida auris infection has been reported
in the USA. To better understand its emergence and transmission dynamics and to guide …

Molecular Epidemiology of Candida auris in Colombia Reveals a Highly Related, Countrywide Colonization With Regional Patterns in Amphotericin B Resistance

P Escandón, NA Chow, DH Caceres… - Clinical Infectious …, 2019 - academic.oup.com
Background Candida auris is a multidrug-resistant yeast associated with hospital outbreaks
worldwide. During 2015–2016, multiple outbreaks were reported in Colombia. We aimed to …

Escherichia coli ST131-H22 as a Foodborne Uropathogen

CM Liu, M Stegger, M Aziz, TJ Johnson, K Waits… - MBio, 2018 - journals.asm.org
Escherichia coli sequence type 131 (ST131) has emerged rapidly to become the most
prevalent extraintestinal pathogenic E. coli clones in circulation today. Previous …

Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones

L Roer, S Overballe-Petersen, F Hansen, K Schønning… - MSphere, 2018 - journals.asm.org
Escherichia coli sequence type 410 (ST410) has been reported worldwide as an
extraintestinal pathogen associated with resistance to fluoroquinolones, third-generation …

Isolation of Anti-Inflammatory and Epithelium Reinforcing Bacteroides and Parabacteroides Spp. from A Healthy Fecal Donor

K Hiippala, V Kainulainen, M Suutarinen, T Heini… - Nutrients, 2020 - mdpi.com
Altered intestinal microbiota is associated with systemic and intestinal diseases, such as
inflammatory bowel disease (IBD). Dysbiotic microbiota with enhanced proinflammatory …

A unique multidrug-resistant clonal Trichophyton population distinct from Trichophyton mentagrophytes/Trichophyton interdigitale complex causing an ongoing …

A Singh, A Masih, J Monroy-Nieto, PK Singh… - Fungal Genetics and …, 2019 - Elsevier
There has been a considerable upsurge of extensive, treatment recalcitrant,
dermatophytosis presenting as tinea corporis and tinea cruris in India since the past few …