Past, present and future of the boundaries of the Pseudomonas genus: proposal of Stutzerimonas gen. nov

J Lalucat, M Gomila, M Mulet, A Zaruma… - Systematic and applied …, 2022 - Elsevier
Pseudomonas is one the best studied bacterial genera, and it is the genus with the highest
number of species among the gram-negative bacteria. Pseudomonas spp. are widely …

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

MJ Neave, A Apprill, C Ferrier-Pagès… - Applied microbiology and …, 2016 - Springer
Endozoicomonas bacteria are emerging as extremely diverse and flexible symbionts of
numerous marine hosts inhabiting oceans worldwide. Their hosts range from simple …

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

DH Parks, C Rinke, M Chuvochina, PA Chaumeil… - Nature …, 2017 - nature.com
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently
available microbial genomes. This is being addressed by advances in sequencing …

Genomics in Bacterial Taxonomy: Impact on the Genus Pseudomonas

J Lalucat, M Mulet, M Gomila, E García-Valdés - Genes, 2020 - mdpi.com
The introduction of genomics is profoundly changing current bacterial taxonomy.
Phylogenomics provides accurate methods for delineating species and allows us to infer the …

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

S Mukherjee, R Seshadri, NJ Varghese… - Nature …, 2017 - nature.com
We present 1,003 reference genomes that were sequenced as part of the Genomic
Encyclopedia of Bacteria and Archaea (GEBA) initiative, selected to maximize sequence …

A post-genomic view of the ecophysiology, catabolism and biotechnological relevance of sulphate-reducing prokaryotes

R Rabus, SS Venceslau, L Wöhlbrand… - Advances in microbial …, 2015 - Elsevier
Dissimilatory sulphate reduction is the unifying and defining trait of sulphate-reducing
prokaryotes (SRP). In their predominant habitats, sulphate-rich marine sediments, SRP have …

The Genomes OnLine Database (GOLD) v. 5: a metadata management system based on a four level (meta) genome project classification

TBK Reddy, AD Thomas, D Stamatis… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Genomes OnLine Database (GOLD; http://www. genomesonline. org) is a
comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD …

Genome‐based evolutionary history of Pseudomonas spp

C Hesse, F Schulz, CT Bull, BT Shaffer… - Environmental …, 2018 - Wiley Online Library
Pseudomonas is a large and diverse genus of Gammaproteobacteria. To provide a
framework for discovery of evolutionary and taxonomic relationships of these bacteria, we …

Genomes OnLine Database (GOLD) v. 6: data updates and feature enhancements

S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Genomes Online Database (GOLD)(https://gold. jgi. doe. gov) is a manually
curated data management system that catalogs sequencing projects with associated …

Firefly genomes illuminate parallel origins of bioluminescence in beetles

TR Fallon, SE Lower, CH Chang, M Bessho-Uehara… - elife, 2018 - elifesciences.org
Fireflies and their luminous courtships have inspired centuries of scientific study. Today
firefly luciferase is widely used in biotechnology, but the evolutionary origin of …