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New views on PII signaling: from nitrogen sensing to global metabolic control
PII proteins are multitasking information-processing proteins occurring in bacteria, archaea,
and plastids, decoding the metabolic state of the cells and providing this information to …
and plastids, decoding the metabolic state of the cells and providing this information to …
A systems approach to infectious disease
M Eckhardt, JF Hultquist, RM Kaake… - Nature Reviews …, 2020 - nature.com
Ongoing social, political and ecological changes in the 21st century have placed more
people at risk of life-threatening acute and chronic infections than ever before. The …
people at risk of life-threatening acute and chronic infections than ever before. The …
The BioGRID interaction database: 2019 update
R Oughtred, C Stark, BJ Breitkreutz, J Rust… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the curation and archival …
https://thebiogrid. org) is an open access database dedicated to the curation and archival …
Protein interaction networks revealed by proteome coevolution
Residue-residue coevolution has been observed across a number of protein-protein
interfaces, but the extent of residue coevolution between protein families on the whole …
interfaces, but the extent of residue coevolution between protein families on the whole …
Thermal proteome profiling in bacteria: probing protein state in vivo
Increasing antibiotic resistance urges for new technologies for studying microbes and
antimicrobial mechanism of action. We adapted thermal proteome profiling (TPP) to probe …
antimicrobial mechanism of action. We adapted thermal proteome profiling (TPP) to probe …
The functional proteome landscape of Escherichia coli
Recent developments in high-throughput reverse genetics, have revolutionized our ability to
map gene function and interactions,,–. The power of these approaches depends on their …
map gene function and interactions,,–. The power of these approaches depends on their …
Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition
MF Lensink, N Nadzirin, S Velankar… - Proteins: Structure …, 2020 - Wiley Online Library
We present the seventh report on the performance of methods for predicting the atomic
resolution structures of protein complexes offered as targets to the community‐wide initiative …
resolution structures of protein complexes offered as targets to the community‐wide initiative …
Population-wide diversity and stability of serum antibody epitope repertoires against human microbiota
Serum antibodies can recognize both pathogens and commensal gut microbiota. However,
our current understanding of antibody repertoires is largely based on DNA sequencing of …
our current understanding of antibody repertoires is largely based on DNA sequencing of …
Triclosan is the predominant antibacterial compound in Ontario sewage sludge
Sewage treatment plants (STPs) accumulate both antibiotic and nonantibiotic antimicrobial
compounds that can select for antibiotic resistant bacteria. Herein, we aimed to identify the …
compounds that can select for antibiotic resistant bacteria. Herein, we aimed to identify the …
Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences
Increasing numbers of protein interactions have been identified in high-throughput
experiments, but only a small proportion have solved structures. Recently, sequence …
experiments, but only a small proportion have solved structures. Recently, sequence …