A guide to state–space modeling of ecological time series

M Auger‐Méthé, K Newman, D Cole… - Ecological …, 2021 - Wiley Online Library
State–space models (SSMs) are an important modeling framework for analyzing ecological
time series. These hierarchical models are commonly used to model population dynamics …

Residency and space use estimation methods based on passive acoustic telemetry data

S Kraft, M Gandra, RJ Lennox, J Mourier, AC Winkler… - Movement Ecology, 2023 - Springer
Acoustic telemetry has helped overcome many of the challenges faced when studying the
movement ecology of aquatic species, allowing to obtain unprecedented amounts of data …

aniMotum, an R package for animal movement data: Rapid quality control, behavioural estimation and simulation

ID Jonsen, WJ Grecian, L Phillips… - Methods in Ecology …, 2023 - Wiley Online Library
Animal tracking data are indispensable for understanding the ecology, behaviour and
physiology of mobile or cryptic species. Meaningful signals in these data can be obscured …

Global spatial risk assessment of sharks under the footprint of fisheries

N Queiroz, NE Humphries, A Couto, M Vedor… - Nature, 2019 - nature.com
Effective ocean management and the conservation of highly migratory species depend on
resolving the overlap between animal movements and distributions, and fishing effort …

ctmm: an r package for analyzing animal relocation data as a continuous‐time stochastic process

JM Calabrese, CH Fleming… - Methods in Ecology and …, 2016 - Wiley Online Library
Movement ecology has developed rapidly over the past decade, driven by advances in
tracking technology that have largely removed data limitations. Development of rigorous …

momentuHMM: R package for generalized hidden Markov models of animal movement

BT McClintock, T Michelot - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Discrete‐time hidden Markov models (HMMs) have become an immensely popular tool for
inferring latent animal behaviours from telemetry data. While movement HMMs typically rely …

Rigorous home range estimation with movement data: a new autocorrelated kernel density estimator

CH Fleming, WF Fagan, T Mueller, KA Olson… - Ecology, 2015 - Wiley Online Library
Quantifying animals' home ranges is a key problem in ecology and has important
conservation and wildlife management applications. Kernel density estimation (KDE) is a …

[KIRJA][B] Animal movement: statistical models for telemetry data

MB Hooten, DS Johnson, BT McClintock, JM Morales - 2017 - taylorfrancis.com
The study of animal movement has always been a key element in ecological science,
because it is inherently linked to critical processes that scale from individuals to populations …

The greenscape shapes surfing of resource waves in a large migratory herbivore

EO Aikens, MJ Kauffman, JA Merkle… - Ecology …, 2017 - Wiley Online Library
Abstract The Green Wave Hypothesis posits that herbivore migration manifests in response
to waves of spring green‐up (ie green‐wave surfing). Nonetheless, empirical support for the …

Hidden Markov models: Pitfalls and opportunities in ecology

R Glennie, T Adam, V Leos‐Barajas… - Methods in Ecology …, 2023 - Wiley Online Library
Abstract Hidden Markov models (HMMs) and their extensions are attractive methods for
analysing ecological data where noisy, multivariate measurements are made of a hidden …