Intragenomic rDNA variation-the product of concerted evolution, mutation, or something in between?

W Wang, X Zhang, S Garcia, AR Leitch, A Kovařík - Heredity, 2023 - nature.com
The classical model of concerted evolution states that hundreds to thousands of ribosomal
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

K Kim, SC Lee, J Lee, Y Yu, K Yang, BS Choi, HJ Koh… - Scientific reports, 2015 - nature.com
Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary
sequences used to understand plant diversity and evolution. We introduce a high …

Cytogenetic features of rRNA genes across land plants: analysis of the Plant rDNA database

S Garcia, A Kovařík, AR Leitch, T Garnatje - The Plant Journal, 2017 - Wiley Online Library
The online resource http://www. plantrdnadatabase. com/stores information on the number,
chromosomal locations and structure of the 5S and 18S‐5.8 S‐26S (35S) ribosomal DNA s …

Plant rDNA database: update and new features

S Garcia, F Gálvez, A Gras, A Kovařík, T Garnatje - Database, 2014 - academic.oup.com
The Plant rDNA database (www. plantrdnadatabase. com) is an open access online
resource providing detailed information on numbers, structures and positions of 5S and 18S …

Non-random distribution of 5S rDNA sites and its association with 45S rDNA in plant chromosomes

F Roa, M Guerra - Cytogenetic and Genome Research, 2015 - karger.com
Abstract 5S and 45S rDNA sites are the best mapped chromosome regions in eukaryotic
chromosomes. In this work, a database was built gathering information about the position …

Rapid and efficient FISH using pre-labeled oligomer probes

NE Waminal, RJ Pellerin, NS Kim, M Jayakodi… - Scientific reports, 2018 - nature.com
Fluorescence in situ hybridization (FISH) is used to visualize the distribution of DNA
elements within a genome. Conventional methods for FISH take 1–2 days. Here, we …

[HTML][HTML] Revisiting the amalgaviral landscapes in plant transcriptomes expands the host range of plant amalgaviruses

VK Sidharthan, V Rajeswari, G Vanamala… - Virology, 2022 - Elsevier
Plant amalgaviruses are monopartite, double-stranded RNA viruses, capable of vertical
transmission through seeds. An attempt to revisit plant transcriptome-assembled contigs for …

Dancing together and separate again: gymnosperms exhibit frequent changes of fundamental 5S and 35S rRNA gene (rDNA) organisation

S Garcia, A Kovařík - Heredity, 2013 - nature.com
In higher eukaryotes, the 5S rRNA genes occur in tandem units and are arranged either
separately (S-type arrangement) or linked to other repeated genes, in most cases to rDNA …

Third release of the plant rDNA database with updated content and information on telomere composition and sequenced plant genomes

D Vitales, U D'Ambrosio, F Gálvez, A Kovařík… - Plant Systematics and …, 2017 - Springer
Here we present the third release of the plant rDNA database (March 2017), an open access
online resource with information on numbers, locations and structure of 5S and 18S-5.8 S …

A Highly Dense Genetic Map for Ginkgo biloba Constructed Using Sequence-Based Markers

H Liu, F Cao, T Yin, Y Chen - Frontiers in Plant Science, 2017 - frontiersin.org
Ginkgo biloba L. is a well-known living gymnosperm fossil that has medicinal and
ornamental value. In this study, a high density genetic map was constructed with …