Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

The biogeochemical sulfur cycle of marine sediments

BB Jørgensen, AJ Findlay, A Pellerin - Frontiers in microbiology, 2019 - frontiersin.org
Microbial dissimilatory sulfate reduction to sulfide is a predominant terminal pathway of
organic matter mineralization in the anoxic seabed. Chemical or microbial oxidation of the …

Diversity and evolution of methane-related pathways in archaea

PS Garcia, S Gribaldo, G Borrel - Annual Review of Microbiology, 2022 - annualreviews.org
Methane is one of the most important greenhouse gases on Earth and holds an important
place in the global carbon cycle. Archaea are the only organisms that use methanogenesis …

An evolving view of methane metabolism in the Archaea

PN Evans, JA Boyd, AO Leu, BJ Woodcroft… - Nature Reviews …, 2019 - nature.com
Methane is a key compound in the global carbon cycle that influences both nutrient cycling
and the Earth's climate. A limited number of microorganisms control the flux of biologically …

Raman microspectroscopy for microbiology

KS Lee, Z Landry, FC Pereira, M Wagner… - Nature Reviews …, 2021 - nature.com
Raman microspectroscopy offers microbiologists a rapid and non-destructive technique to
assess the chemical composition of individual live microorganisms in near real time. In this …

Methane feedbacks to the global climate system in a warmer world

JF Dean, JJ Middelburg, T Röckmann… - Reviews of …, 2018 - Wiley Online Library
Methane (CH4) is produced in many natural systems that are vulnerable to change under a
warming climate, yet current CH4 budgets, as well as future shifts in CH4 emissions, have …

Microbial sulfur metabolism and environmental implications

B Wu, F Liu, W Fang, T Yang, GH Chen, Z He… - Science of The Total …, 2021 - Elsevier
Sulfur as a macroelement plays an important role in biochemistry in both natural
environments and engineering biosystems, which can be further linked to other important …

Archaea catalyze iron-dependent anaerobic oxidation of methane

KF Ettwig, B Zhu, D Speth, JT Keltjens… - Proceedings of the …, 2016 - pnas.org
Anaerobic oxidation of methane (AOM) is crucial for controlling the emission of this potent
greenhouse gas to the atmosphere. Nitrite-, nitrate-, and sulfate-dependent methane …

Single cell activity reveals direct electron transfer in methanotrophic consortia

SE McGlynn, GL Chadwick, CP Kempes, VJ Orphan - Nature, 2015 - nature.com
Multicellular assemblages of microorganisms are ubiquitous in nature, and the proximity
afforded by aggregation is thought to permit intercellular metabolic coupling that can …

Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes

L Qian, X Yu, H Gu, F Liu, Y Fan, C Wang, Q He, Y Tian… - Microbiome, 2023 - Springer
Background Mangrove ecosystems are considered as hot spots of biogeochemical cycling,
yet the diversity, function and coupling mechanism of microbially driven biogeochemical …