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Deep generative modeling for volume reconstruction in cryo-electron microscopy
Advances in cryo-electron microscopy (cryo-EM) for high-resolution imaging of biomolecules
in solution have provided new challenges and opportunities for algorithm development for …
in solution have provided new challenges and opportunities for algorithm development for …
AI-based methods for biomolecular structure modeling for Cryo-EM
Highlights•Cryo-EM structure determination involves numerous computational data
processing steps.•Many AI-based methods have been developed for cryo-EM data …
processing steps.•Many AI-based methods have been developed for cryo-EM data …
Amortized inference for heterogeneous reconstruction in cryo-EM
Cryo-electron microscopy (cryo-EM) is an imaging modality that provides unique insights
into the dynamics of proteins and other building blocks of life. The algorithmic challenge of …
into the dynamics of proteins and other building blocks of life. The algorithmic challenge of …
DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images
Single-particle cryo-electron microscopy (cryo-EM) is a technique for biomolecular structure
reconstruction from vitrified samples containing many copies of a biomolecular complex …
reconstruction from vitrified samples containing many copies of a biomolecular complex …
Image to sphere: Learning equivariant features for efficient pose prediction
Predicting the pose of objects from a single image is an important but difficult computer
vision problem. Methods that predict a single point estimate do not predict the pose of …
vision problem. Methods that predict a single point estimate do not predict the pose of …
Residual multiplicative filter networks for multiscale reconstruction
Abstract Coordinate networks like Multiplicative Filter Networks (MFNs) and BACON offer
some control over the frequency spectrum used to represent continuous signals such as …
some control over the frequency spectrum used to represent continuous signals such as …
High-resolution real-space reconstruction of cryo-EM structures using a neural field network
Y Huang, C Zhu, X Yang, M Liu - Nature Machine Intelligence, 2024 - nature.com
The elucidation of three-dimensional (3D) structures is crucial for unravelling the protein
function and illuminating mechanisms in structural biology. Cryogenic electron microscopy …
function and illuminating mechanisms in structural biology. Cryogenic electron microscopy …
Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies
The dynamics of biomolecules are crucial for our understanding of their functioning in living
systems. However, current 3D imaging techniques, such as cryogenic electron microscopy …
systems. However, current 3D imaging techniques, such as cryogenic electron microscopy …
[HTML][HTML] Novel artificial intelligence-based approaches for ab initio structure determination and atomic model building for cryo-electron microscopy
Single particle cryo-electron microscopy (cryo-EM) has emerged as the prevailing method
for near-atomic structure determination, shedding light on the important molecular …
for near-atomic structure determination, shedding light on the important molecular …
Amortized template-matching of molecular conformations from cryo-electron microscopy images using simulation-based inference
Biomolecules undergo conformational changes to perform their function. Cryo-electron
microscopy (cryo-EM) can capture snapshots of biomolecules in various conformations …
microscopy (cryo-EM) can capture snapshots of biomolecules in various conformations …