Deep generative modeling for volume reconstruction in cryo-electron microscopy

C Donnat, A Levy, F Poitevin, ED Zhong… - Journal of structural …, 2022 - Elsevier
Advances in cryo-electron microscopy (cryo-EM) for high-resolution imaging of biomolecules
in solution have provided new challenges and opportunities for algorithm development for …

AI-based methods for biomolecular structure modeling for Cryo-EM

F Farheen, G Terashi, H Zhu, D Kihara - Current Opinion in Structural …, 2025 - Elsevier
Highlights•Cryo-EM structure determination involves numerous computational data
processing steps.•Many AI-based methods have been developed for cryo-EM data …

Amortized inference for heterogeneous reconstruction in cryo-EM

A Levy, G Wetzstein, JNP Martel… - Advances in neural …, 2022 - proceedings.neurips.cc
Cryo-electron microscopy (cryo-EM) is an imaging modality that provides unique insights
into the dynamics of proteins and other building blocks of life. The algorithmic challenge of …

DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images

I Hamitouche, S Jonic - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
Single-particle cryo-electron microscopy (cryo-EM) is a technique for biomolecular structure
reconstruction from vitrified samples containing many copies of a biomolecular complex …

Image to sphere: Learning equivariant features for efficient pose prediction

DM Klee, O Biza, R Platt, R Walters - arxiv preprint arxiv:2302.13926, 2023 - arxiv.org
Predicting the pose of objects from a single image is an important but difficult computer
vision problem. Methods that predict a single point estimate do not predict the pose of …

Residual multiplicative filter networks for multiscale reconstruction

S Shekarforoush, D Lindell, DJ Fleet… - Advances in Neural …, 2022 - proceedings.neurips.cc
Abstract Coordinate networks like Multiplicative Filter Networks (MFNs) and BACON offer
some control over the frequency spectrum used to represent continuous signals such as …

High-resolution real-space reconstruction of cryo-EM structures using a neural field network

Y Huang, C Zhu, X Yang, M Liu - Nature Machine Intelligence, 2024 - nature.com
The elucidation of three-dimensional (3D) structures is crucial for unravelling the protein
function and illuminating mechanisms in structural biology. Cryogenic electron microscopy …

Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies

E Ye, Y Wang, H Zhang, Y Gao… - Proceedings of the …, 2023 - openaccess.thecvf.com
The dynamics of biomolecules are crucial for our understanding of their functioning in living
systems. However, current 3D imaging techniques, such as cryogenic electron microscopy …

[HTML][HTML] Novel artificial intelligence-based approaches for ab initio structure determination and atomic model building for cryo-electron microscopy

MC DiIorio, AW Kulczyk - Micromachines, 2023 - mdpi.com
Single particle cryo-electron microscopy (cryo-EM) has emerged as the prevailing method
for near-atomic structure determination, shedding light on the important molecular …

Amortized template-matching of molecular conformations from cryo-electron microscopy images using simulation-based inference

L Dingeldein, D Silva-Sánchez, L Evans, E D'Imprima… - bioRxiv, 2024 - biorxiv.org
Biomolecules undergo conformational changes to perform their function. Cryo-electron
microscopy (cryo-EM) can capture snapshots of biomolecules in various conformations …