To Grow or Not to Grow: Nutritional Control of Development During Caenorhabditis elegans L1 Arrest

LR Baugh - Genetics, 2013 - academic.oup.com
It is widely appreciated that larvae of the nematode Caenorhabditis elegans arrest
development by forming dauer larvae in response to multiple unfavorable environmental …

Evolutionary insights into RNA trans-splicing in vertebrates

Q Lei, C Li, Z Zuo, C Huang, H Cheng… - Genome biology and …, 2016 - academic.oup.com
Pre-RNA splicing is an essential step in generating mature mRNA. RNA trans-splicing
combines two separate pre-mRNA molecules to form a chimeric non-co-linear RNA, which …

PaxDb, a database of protein abundance averages across all three domains of life

M Wang, M Weiss, M Simonovic, G Haertinger… - Molecular & cellular …, 2012 - ASBMB
Although protein expression is regulated both temporally and spatially, most proteins have
an intrinsic," typical" range of functionally effective abundance levels. These extend from a …

RNA processing enables predictable programming of gene expression

L Qi, RE Haurwitz, W Shao, JA Doudna… - Nature biotechnology, 2012 - nature.com
Complex interactions among genetic components often result in variable systemic
performance in designed multigene systems,. Using the bacterial clustered regularly …

Activated entomopathogenic nematode infective juveniles release lethal venom proteins

D Lu, M Macchietto, D Chang, MM Barros… - PloS …, 2017 - journals.plos.org
Entomopathogenic nematodes (EPNs) are unique parasites due to their symbiosis with
entomopathogenic bacteria and their ability to kill insect hosts quickly after infection. It is …

Hierarchical sparse coding in the sensory system of Caenorhabditis elegans

A Zaslaver, I Liani, O Shtangel… - Proceedings of the …, 2015 - National Acad Sciences
Animals with compact sensory systems face an encoding problem where a small number of
sensory neurons are required to encode information about its surrounding complex …

[HTML][HTML] Trans-splicing and operons in C. elegans

T Blumenthal - WormBook: The Online Review of C. elegans …, 2018 - ncbi.nlm.nih.gov
About 70% of C. elegans mRNAs are trans-spliced to one of two 22 nucleotide spliced
leaders. SL1 is used to trim off the 5'ends of pre-mRNAs and replace them with the SL1 …

Pol II docking and pausing at growth and stress genes in C. elegans

CS Maxwell, WS Kruesi, LJ Core, N Kurhanewicz… - Cell reports, 2014 - cell.com
Fluctuations in nutrient availability profoundly impact gene expression. Previous work
revealed postrecruitment regulation of RNA polymerase II (Pol II) during starvation and …

Application of Transcriptional Gene Modules to Analysis of Caenorhabditis elegans' Gene Expression Data

M Cary, K Podshivalova… - G3: Genes, Genomes …, 2020 - academic.oup.com
Identification of co-expressed sets of genes (gene modules) is used widely for grou**
functionally related genes during transcriptomic data analysis. An organism-wide atlas of …

Trans-splicing enhances translational efficiency in C. elegans

YF Yang, X Zhang, X Ma, T Zhao, Q Sun… - Genome …, 2017 - genome.cshlp.org
Translational efficiency is subject to extensive regulation. However, the factors influencing
such regulation are poorly understood. In Caenorhabditis elegans, 62% of genes are trans …