Optimal transport for single-cell and spatial omics

C Bunne, G Schiebinger, A Krause, A Regev… - Nature Reviews …, 2024 - nature.com
High-throughput single-cell profiling provides an unprecedented ability to uncover the
molecular states of millions of cells. These technologies are, however, destructive to cells …

On the sample complexity of entropic optimal transport

P Rigollet, AJ Stromme - The Annals of Statistics, 2025 - projecteuclid.org
We study the sample complexity of entropic optimal transport in high dimensions using
computationally efficient plug-in estimators. We significantly advance the state of the art by …

Neural optimal transport with lagrangian costs

AA Pooladian, C Domingo-Enrich, RTQ Chen… - arxiv preprint arxiv …, 2024 - arxiv.org
We investigate the optimal transport problem between probability measures when the
underlying cost function is understood to satisfy a least action principle, also known as a …

Learning costs for structured monge displacements

M Klein, AA Pooladian, P Ablin, E Ndiaye… - arxiv preprint arxiv …, 2023 - arxiv.org
Optimal transport theory has provided machine learning with several tools to infer a push-
forward map between densities from samples. While this theory has recently seen …

Explanatory Model Monitoring to Understand the Effects of Feature Shifts on Performance

T Decker, A Koebler, M Lebacher, I Thon… - Proceedings of the 30th …, 2024 - dl.acm.org
Monitoring and maintaining machine learning models are among the most critical
challenges in translating recent advances in the field into real-world applications. However …

Structured Transforms Across Spaces with Cost-Regularized Optimal Transport

O Sebbouh, M Cuturi, G Peyré - International Conference on …, 2024 - proceedings.mlr.press
Matching a source to a target probability measure is often solved by instantiating a linear
optimal transport (OT) problem, parameterized by a ground cost function that quantifies …

A semiconcavity approach to stability of entropic plans and exponential convergence of Sinkhorn's algorithm

A Chiarini, G Conforti, G Greco, L Tamanini - arxiv preprint arxiv …, 2024 - arxiv.org
We study stability of optimizers and convergence of Sinkhorn's algorithm in the framework of
entropic optimal transport. We show entropic stability for optimal plans in terms of the …

Regularized estimation of Monge-Kantorovich quantiles for spherical data

B Bercu, J Bigot, G Thurin - arxiv preprint arxiv:2407.02085, 2024 - arxiv.org
Tools from optimal transport (OT) theory have recently been used to define a notion of
quantile function for directional data. In practice, regularization is mandatory for applications …

Sparse Domain Transfer via Elastic Net Regularization

J Zhang, F Farnia - arxiv preprint arxiv:2405.07489, 2024 - arxiv.org
Transportation of samples across different domains is a central task in several machine
learning problems. A sensible requirement for domain transfer tasks in computer vision and …

Differentiable Cost-Parameterized Monge Map Estimators

S Howard, G Deligiannidis, P Rebeschini… - arxiv preprint arxiv …, 2024 - arxiv.org
Within the field of optimal transport (OT), the choice of ground cost is crucial to ensuring that
the optimality of a transport map corresponds to usefulness in real-world applications. It is …