Perspective: Coarse-grained models for biomolecular systems

WG Noid - The Journal of chemical physics, 2013 - pubs.aip.org
By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …

Multiscale modeling of emergent materials: biological and soft matter

T Murtola, A Bunker, I Vattulainen, M Deserno… - Physical Chemistry …, 2009 - pubs.rsc.org
In this review, we focus on four current related issues in multiscale modeling of soft and
biological matter. First, we discuss how to use structural information from detailed models (or …

Partial structure factors from disordered materials diffraction data: An approach using empirical potential structure refinement

AK Soper - Physical Review B—Condensed Matter and Materials …, 2005 - APS
Neutron and x-ray diffraction are widely used to measure the structure of liquids and
disordered solids. Using techniques such as isotope substitution or anomalous dispersion or …

[BOOK][B] Introduction to liquid state physics

NH March - 2002 - books.google.com
This is the background against which the present Volume has come into being. It has, for
reasons expounded above, much greater breadth than our two earlier Volumes. We feel as …

Can polymer coils be modeled as “soft colloids”?

AA Louis, PG Bolhuis, JP Hansen, EJ Meijer - Physical review letters, 2000 - APS
We map dilute or semidilute solutions of nonintersecting polymer chains onto a fluid of “soft”
particles interacting via a concentration dependent effective pair potential, by inverting the …

Accurate effective pair potentials for polymer solutions

PG Bolhuis, AA Louis, JP Hansen… - The Journal of Chemical …, 2001 - pubs.aip.org
Dilute or semidilute solutions of nonintersecting self-avoiding walk (SAW) polymer chains
are mapped onto a fluid of “soft” particles interacting via an effective pair potential between …

Liquid Metals

NH March - Liquid Metals, 1991 - ui.adsabs.harvard.edu
Abstract Preface; 1. Outline; 2. Pair correlation function and structure factors of ions; 3.
Thermodynamics; 4. Electron screening and effective ion-ion interactions; 5. Inter-ionic …

Multiscale coarse-graining and structural correlations: Connections to liquid-state theory

WG Noid, JW Chu, GS Ayton… - The Journal of Physical …, 2007 - ACS Publications
A statistical mechanical framework elucidates the significance of structural correlations
between coarse-grained (CG) sites in the multiscale coarse-graining (MS-CG) method …

Systematic coarse-graining of molecular models by the Newton inversion method

A Lyubartsev, A Mirzoev, LJ Chen… - Faraday discussions, 2010 - pubs.rsc.org
Systematic construction of coarse-grained molecular models from detailed atomistic
simulations, and even from ab initio simulations is discussed. Atomistic simulations are first …

A structure-based coarse-grained model for polymer melts

RLC Akkermans, WJ Briels - The Journal of Chemical Physics, 2001 - pubs.aip.org
In this study we explore a systematic procedure to coarsen a microscopic model towards a
mesoscopic model. The procedure is applied to a system of chains of ten beads …