Machine learning in microscopy–insights, opportunities and challenges

I Cunha, E Latron, S Bauer, D Sage… - Journal of cell …, 2024 - journals.biologists.com
Machine learning (ML) is transforming the field of image processing and analysis, from
automation of laborious tasks to open-ended exploration of visual patterns. This has striking …

AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth

IR Nabi, B Cardoen, IM Khater, G Gao, TH Wong… - Journal of Cell …, 2024 - rupress.org
Super-resolution microscopy, or nanoscopy, enables the use of fluorescent-based molecular
localization tools to study molecular structure at the nanoscale level in the intact cell …

Image analysis optimization for nanowire-based optical detection of molecules

R Davtyan, N Anttu, J Valderas-Gutiérrez, F Höök… - …, 2024 - degruyter.com
Semiconductor nanowires can enhance the signal of fluorescent molecules, thus
significantly improving the limits of fluorescence detection in optical biosensing. In this work …

Self‐Driving Microscopes: AI Meets Super‐Resolution Microscopy

EN Ward, A Scheeder, M Barysevich… - Small …, 2025 - Wiley Online Library
Abstract The integration of Machine Learning (ML) with super‐resolution microscopy
represents a transformative advancement in biomedical research. Recent advances in ML …

Machine Learning‐Based Estimation of Experimental Artifacts and Image Quality in Fluorescence Microscopy

E Corbetta, T Bocklitz - Advanced Intelligent Systems, 2024 - Wiley Online Library
Reliable characterization of image data is fundamental for imaging applications, FAIR data
management, and an objective evaluation of image acquisition, processing, and analysis …

VNC-Dist: A machine learning-based tool for quantification of neuronal positioning in the ventral nerve cord of C. elegans

S Saharkhiz, M Petite, T Roenspies, TJ Perkins… - bioRxiv, 2024 - biorxiv.org
The ventral nerve cord (VNC) of newly hatched C. elegans contains 22 motoneurons
organized into three distinct classes: DD, DA, and DB, that show stereotypical positioning …

CelFDrive: Artificial Intelligence assisted microscopy for automated detection of rare events

S Brooks, S Toral-Perez, DS Corcoran, K Kilborn… - bioRxiv, 2024 - biorxiv.org
CelFDrive automates high-resolution 3D imaging cells of interest across a variety of
fluorescence microscopes, integrating deep learning cell classification from auxiliary low …