Evaluation of openai o1: Opportunities and challenges of agi

T Zhong, Z Liu, Y Pan, Y Zhang, Y Zhou… - arxiv preprint arxiv …, 2024 - arxiv.org
This comprehensive study evaluates the performance of OpenAI's o1-preview large
language model across a diverse array of complex reasoning tasks, spanning multiple …

PomBase: a Global Core Biodata Resource—growth, collaboration, and sustainability

KM Rutherford, M Lera-Ramírez, V Wood - Genetics, 2024 - academic.oup.com
Abstract PomBase (https://www. pombase. org), the model organism database (MOD) for
fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the …

BCG vaccination stimulates integrated organ immunity by feedback of the adaptive immune response to imprint prolonged innate antiviral resistance

A Lee, K Floyd, S Wu, Z Fang, TK Tan, HM Froggatt… - Nature …, 2024 - nature.com
Abstract Bacille Calmette–Guérin (BCG) vaccination can confer nonspecific protection
against heterologous pathogens. However, the underlying mechanisms remain mysterious …

InterPro: the protein sequence classification resource in 2025<? mode longmeta?>

M Blum, A Andreeva, LC Florentino… - Nucleic Acids …, 2025 - academic.oup.com
Abstract InterPro (https://www. ebi. ac. uk/interpro) is a freely accessible resource for the
classification of protein sequences into families. It integrates predictive models, known as …

AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding

L Zheng, S Shi, M Lu, P Fang, Z Pan, H Zhang, Z Zhou… - Genome biology, 2024 - Springer
Protein function annotation has been one of the longstanding issues in biological sciences,
and various computational methods have been developed. However, the existing methods …

DisProt in 2024: improving function annotation of intrinsically disordered proteins

MC Aspromonte, MV Nugnes, F Quaglia… - Nucleic Acids …, 2024 - academic.oup.com
Abstract DisProt (URL: https://disprot. org) is the gold standard database for intrinsically
disordered proteins and regions, providing valuable information about their functions. The …

Ultrasound frequency-controlled microbubble dynamics in brain vessels regulate the enrichment of inflammatory pathways in the blood-brain barrier

Y Guo, H Lee, C Kim, C Park, A Yamamichi… - Nature …, 2024 - nature.com
Microbubble-enhanced ultrasound provides a noninvasive physical method to locally
overcome major obstacles to the accumulation of blood-borne therapeutics in the brain …

An integrated transcriptomic cell atlas of human neural organoids

Z He, L Dony, JS Fleck, A Szałata, KX Li, I Slišković… - Nature, 2024 - nature.com
Human neural organoids, generated from pluripotent stem cells in vitro, are useful tools to
study human brain development, evolution and disease. However, it is unclear which parts …

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

TE Putman, K Schaper, N Matentzoglu… - Nucleic acids …, 2024 - academic.oup.com
Bridging the gap between genetic variations, environmental determinants, and phenotypic
outcomes is critical for supporting clinical diagnosis and understanding mechanisms of …

The STRING database in 2025: protein networks with directionality of regulation

D Szklarczyk, K Nastou, M Koutrouli… - Nucleic Acids …, 2025 - academic.oup.com
Proteins cooperate, regulate and bind each other to achieve their functions. Understanding
the complex network of their interactions is essential for a systems-level description of …