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A guide to machine learning for biologists
The expanding scale and inherent complexity of biological data have encouraged a growing
use of machine learning in biology to build informative and predictive models of the …
use of machine learning in biology to build informative and predictive models of the …
Artificial intelligence challenges for predicting the impact of mutations on protein stability
Stability is a key ingredient of protein fitness, and its modification through targeted mutations
has applications in various fields, such as protein engineering, drug design, and deleterious …
has applications in various fields, such as protein engineering, drug design, and deleterious …
DDMut: predicting effects of mutations on protein stability using deep learning
Understanding the effects of mutations on protein stability is crucial for variant interpretation
and prioritisation, protein engineering, and biotechnology. Despite significant efforts …
and prioritisation, protein engineering, and biotechnology. Despite significant efforts …
A structural biology community assessment of AlphaFold2 applications
Most proteins fold into 3D structures that determine how they function and orchestrate the
biological processes of the cell. Recent developments in computational methods for protein …
biological processes of the cell. Recent developments in computational methods for protein …
DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations
Predicting the effect of missense variations on protein stability and dynamics is important for
understanding their role in diseases, and the link between protein structure and function …
understanding their role in diseases, and the link between protein structure and function …
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
Proteins are highly dynamic molecules, whose function is intrinsically linked to their
molecular motions. Despite the pivotal role of protein dynamics, their computational …
molecular motions. Despite the pivotal role of protein dynamics, their computational …
[HTML][HTML] Can predicted protein 3D structures provide reliable insights into whether missense variants are disease associated?
Abstract Knowledge of protein structure can be used to predict the phenotypic consequence
of a missense variant. Since structural coverage of the human proteome can be roughly …
of a missense variant. Since structural coverage of the human proteome can be roughly …
mCSM-PPI2: predicting the effects of mutations on protein–protein interactions
Protein–protein Interactions are involved in most fundamental biological processes, with
disease causing mutations enriched at their interfaces. Here we present mCSM-PPI2, a …
disease causing mutations enriched at their interfaces. Here we present mCSM-PPI2, a …
ACE2 gene variants may underlie interindividual variability and susceptibility to COVID-19 in the Italian population
In December 2019, an initial cluster of interstitial bilateral pneumonia emerged in Wuhan,
China. A human-to-human transmission was assumed and a previously unrecognized entity …
China. A human-to-human transmission was assumed and a previously unrecognized entity …
SDM: a server for predicting effects of mutations on protein stability
AP Pandurangan, B Ochoa-Montano… - Nucleic acids …, 2017 - academic.oup.com
Here, we report a webserver for the improved SDM, used for predicting the effects of
mutations on protein stability. As a pioneering knowledge-based approach, SDM has been …
mutations on protein stability. As a pioneering knowledge-based approach, SDM has been …