A survey on deep learning in medical image registration: New technologies, uncertainty, evaluation metrics, and beyond

J Chen, Y Liu, S Wei, Z Bian, S Subramanian… - Medical Image …, 2024‏ - Elsevier
Deep learning technologies have dramatically reshaped the field of medical image
registration over the past decade. The initial developments, such as regression-based and U …

Medical image registration: a review

FPM Oliveira, JMRS Tavares - Computer methods in biomechanics …, 2014‏ - Taylor & Francis
This paper presents a review of automated image registration methodologies that have been
used in the medical field. The aim of this paper is to be an introduction to the field, provide …

SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry

JE Iglesias, B Billot, Y Balbastre, C Magdamo… - Science …, 2023‏ - science.org
Every year, millions of brain magnetic resonance imaging (MRI) scans are acquired in
hospitals across the world. These have the potential to revolutionize our understanding of …

Quicksilver: Fast predictive image registration–a deep learning approach

X Yang, R Kwitt, M Styner, M Niethammer - NeuroImage, 2017‏ - Elsevier
This paper introduces Quicksilver, a fast deformable image registration method. Quicksilver
registration for image-pairs works by patch-wise prediction of a deformation model based …

The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics

S Bakas, C Sako, H Akbari, M Bilello, A Sotiras… - Scientific data, 2022‏ - nature.com
Glioblastoma is the most common aggressive adult brain tumor. Numerous studies have
reported results from either private institutional data or publicly available datasets. However …

Within-subject template estimation for unbiased longitudinal image analysis

M Reuter, NJ Schmansky, HD Rosas, B Fischl - Neuroimage, 2012‏ - Elsevier
Longitudinal image analysis has become increasingly important in clinical studies of normal
aging and neurodegenerative disorders. Furthermore, there is a growing appreciation of the …

Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment

PA Yushkevich, JB Pluta, H Wang, L **e… - Human brain …, 2015‏ - Wiley Online Library
We evaluate a fully automatic technique for labeling hippocampal subfields and cortical
subregions in the medial temporal lobe in in vivo 3 Tesla MRI. The method performs …

A reproducible evaluation of ANTs similarity metric performance in brain image registration

BB Avants, NJ Tustison, G Song, PA Cook, A Klein… - Neuroimage, 2011‏ - Elsevier
The United States National Institutes of Health (NIH) commit significant support to open-
source data and software resources in order to foment reproducibility in the biomedical …

Unbiased average age-appropriate atlases for pediatric studies

V Fonov, AC Evans, K Botteron, CR Almli… - Neuroimage, 2011‏ - Elsevier
Spatial normalization, registration, and segmentation techniques for Magnetic Resonance
Imaging (MRI) often use a target or template volume to facilitate processing, take advantage …

Multi-atlas segmentation with joint label fusion

H Wang, JW Suh, SR Das, JB Pluta… - IEEE transactions on …, 2012‏ - ieeexplore.ieee.org
Multi-atlas segmentation is an effective approach for automatically labeling objects of
interest in biomedical images. In this approach, multiple expert-segmented example images …