Inferring the historical patterns of biological evolution
M Pagel - Nature, 1999 - nature.com
Phylogenetic trees describe the pattern of descent amongst a group of species. With the
rapid accumulation of DNA sequence data, more and more phylogenies are being …
rapid accumulation of DNA sequence data, more and more phylogenies are being …
Niche dynamics in space and time
Niche conservatism, the tendency of a species niche to remain unchanged over time, is
often assumed when discussing, explaining or predicting biogeographical patterns …
often assumed when discussing, explaining or predicting biogeographical patterns …
The durability of natural infection and vaccine-induced immunity against future infection by SARS-CoV-2
The durability of vaccine-mediated immunity to SARS-CoV-2, the durations to breakthrough
infection, and the optimal timings of booster vaccination are crucial knowledge for pandemic …
infection, and the optimal timings of booster vaccination are crucial knowledge for pandemic …
Conceptual and statistical problems with the DEC+ J model of founder‐event speciation and its comparison with DEC via model selection
Phylogenetic studies of geographic range evolution are increasingly using statistical model
selection methods to choose among variants of the dispersal‐extinction‐cladogenesis …
selection methods to choose among variants of the dispersal‐extinction‐cladogenesis …
phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
LJ Revell - PeerJ, 2024 - peerj.com
Phylogenetic comparative methods comprise the general endeavor of using an estimated
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …
[HTML][HTML] The ancestral flower of angiosperms and its early diversification
H Sauquet, M Von Balthazar, S Magallón… - Nature …, 2017 - nature.com
Recent advances in molecular phylogenetics and a series of important palaeobotanical
discoveries have revolutionized our understanding of angiosperm diversification. Yet, the …
discoveries have revolutionized our understanding of angiosperm diversification. Yet, the …
Detecting hidden diversification shifts in models of trait-dependent speciation and extinction
The distribution of diversity can vary considerably from clade to clade. Attempts to
understand these patterns often employ state-dependent speciation and extinction models …
understand these patterns often employ state-dependent speciation and extinction models …
Diversitree: comparative phylogenetic analyses of diversification in R
RG FitzJohn - Methods in Ecology and Evolution, 2012 - Wiley Online Library
The R package 'diversitree'contains a number of classical and contemporary comparative
phylogenetic methods. Key included methods are BiSSE (binary state speciation and …
phylogenetic methods. Key included methods are BiSSE (binary state speciation and …
[CITA][C] Phylogeography: The History and Formation of Species
JC Avise - 2000 - books.google.com
Phylogeography is a discipline concerned with various relationships between gene
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …
Testing for phylogenetic signal in comparative data: behavioral traits are more labile
The primary rationale for the use of phylogenetically based statistical methods is that
phylogenetic signal, the tendency for related species to resemble each other, is ubiquitous …
phylogenetic signal, the tendency for related species to resemble each other, is ubiquitous …