Molecular dynamics: survey of methods for simulating the activity of proteins
SA Adcock, JA McCammon - Chemical reviews, 2006 - ACS Publications
The term molecular mechanics (MM) refers to the use of simple potential-energy functions
(eg, harmonic oscillator or Coulombic potentials) to model molecular systems. Molecular …
(eg, harmonic oscillator or Coulombic potentials) to model molecular systems. Molecular …
Using Xplor–NIH for NMR molecular structure determination
CD Schwieters, JJ Kuszewski, GM Clore - Progress in nuclear magnetic …, 2006 - Elsevier
Xplor–NIH [1] is a generalized package for biomolecular structure determination from
experimental NMR data combined with known geometric data. This is achieved by seeking …
experimental NMR data combined with known geometric data. This is achieved by seeking …
Global analysis of protein folding using massively parallel design, synthesis, and testing
Proteins fold into unique native structures stabilized by thousands of weak interactions that
collectively overcome the entropic cost of folding. Although these forces are “encoded” in the …
collectively overcome the entropic cost of folding. Although these forces are “encoded” in the …
Accurate de novo design of hyperstable constrained peptides
Naturally occurring, pharmacologically active peptides constrained with covalent crosslinks
generally have shapes that have evolved to fit precisely into binding pockets on their targets …
generally have shapes that have evolved to fit precisely into binding pockets on their targets …
Principles for designing ideal protein structures
Modern structural genomics projects demand for integrated methods for the interpretation
and storage of nuclear magnetic resonance (NMR) data. Here we present version 2.1 of our …
and storage of nuclear magnetic resonance (NMR) data. Here we present version 2.1 of our …
Mechanism for the activation of the anaplastic lymphoma kinase receptor
AV Reshetnyak, P Rossi, AG Myasnikov, M Sowaileh… - Nature, 2021 - nature.com
Anaplastic lymphoma kinase (ALK) is a receptor tyrosine kinase (RTK) that regulates
important functions in the central nervous system,. The ALK gene is a hotspot for …
important functions in the central nervous system,. The ALK gene is a hotspot for …
Recognition and specificity determinants of the human cbx chromodomains
L Kaustov, H Ouyang, M Amaya, A Lemak… - Journal of Biological …, 2011 - ASBMB
The eight mammalian Cbx proteins are chromodomain-containing proteins involved in
regulation of heterochromatin, gene expression, and developmental programs. They are …
regulation of heterochromatin, gene expression, and developmental programs. They are …