DNA synthesis technologies to close the gene writing gap

A Hoose, R Vellacott, M Storch, PS Freemont… - Nature Reviews …, 2023 - nature.com
Synthetic DNA is of increasing demand across many sectors of research and commercial
activities. Engineering biology, therapy, data storage and nanotechnology are set for rapid …

High-throughput functional genomics using CRISPR–Cas9

O Shalem, NE Sanjana, F Zhang - Nature Reviews Genetics, 2015 - nature.com
Forward genetic screens are powerful tools for the discovery and functional annotation of
genetic elements. Recently, the RNA-guided CRISPR (clustered regularly interspaced short …

[HTML][HTML] Mammalian SWI/SNF chromatin remodeling complexes promote tyrosine kinase inhibitor resistance in EGFR-mutant lung cancer

FJ de Miguel, C Gentile, WW Feng, SJ Silva, A Sankar… - Cancer Cell, 2023 - cell.com
Acquired resistance to tyrosine kinase inhibitors (TKI), such as osimertinib used to treat
EGFR-mutant lung adenocarcinomas, limits long-term efficacy and is frequently caused by …

Massively parallel de novo protein design for targeted therapeutics

A Chevalier, DA Silva, GJ Rocklin, DR Hicks… - Nature, 2017 - nature.com
De novo protein design holds promise for creating small stable proteins with shapes
customized to bind therapeutic targets. We describe a massively parallel approach for …

Synthetic DNA synthesis and assembly: putting the synthetic in synthetic biology

RA Hughes, AD Ellington - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
The chemical synthesis of DNA oligonucleotides and their assembly into synthons, genes,
circuits, and even entire genomes by gene synthesis methods has become an enabling …

A systematic p53 mutation library links differential functional impact to cancer mutation pattern and evolutionary conservation

E Kotler, O Shani, G Goldfeld, M Lotan-Pompan… - Molecular cell, 2018 - cell.com
The TP53 gene is frequently mutated in human cancer. Research has focused
predominantly on six major" hotspot" codons, which account for only∼ 30% of cancer …

Large-scale de novo DNA synthesis: technologies and applications

S Kosuri, GM Church - Nature methods, 2014 - nature.com
For over 60 years, the synthetic production of new DNA sequences has helped researchers
understand and engineer biology. Here we summarize methods and caveats for the de novo …

A genome-scale shRNA resource for transgenic RNAi in Drosophila

JQ Ni, R Zhou, B Czech, LP Liu, L Holderbaum… - Nature …, 2011 - nature.com
Existing transgenic RNAi resources in Drosophila melanogaster based on long double-
stranded hairpin RNAs are powerful tools for functional studies, but they are ineffective in …

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

E Sharon, Y Kalma, A Sharp, T Raveh-Sadka… - Nature …, 2012 - nature.com
Despite extensive research, our understanding of the rules according to which cis-regulatory
sequences are converted into gene expression is limited. We devised a method for …

Systematic discovery of cap-independent translation sequences in human and viral genomes

S Weingarten-Gabbay, S Elias-Kirma, R Nir… - Science, 2016 - science.org
INTRODUCTION The recruitment of the ribosome to a specific mRNA is a critical step in the
production of proteins in cells. In addition to a general recognition of the “cap” structure at …