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The dawn of spatial omics
Spatial omics has been widely heralded as the new frontier in life sciences. This term
encompasses a wide range of techniques that promise to transform many areas of biology …
encompasses a wide range of techniques that promise to transform many areas of biology …
Spatial profiling technologies illuminate the tumor microenvironment
O Elhanani, R Ben-Uri, L Keren - Cancer cell, 2023 - cell.com
The tumor microenvironment (TME) is composed of many different cellular and acellular
components that together drive tumor growth, invasion, metastasis, and response to …
components that together drive tumor growth, invasion, metastasis, and response to …
An introduction to spatial transcriptomics for biomedical research
CG Williams, HJ Lee, T Asatsuma, R Vento-Tormo… - Genome medicine, 2022 - Springer
Single-cell transcriptomics (scRNA-seq) has become essential for biomedical research over
the past decade, particularly in developmental biology, cancer, immunology, and …
the past decade, particularly in developmental biology, cancer, immunology, and …
The emerging landscape of spatial profiling technologies
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …
profiling methods as a major pillar for cellular atlas building of complex samples, from …
High-plex protein and whole transcriptome co-map** at cellular resolution with spatial CITE-seq
In this study, we extended co-indexing of transcriptomes and epitopes (CITE) to the spatial
dimension and demonstrated high-plex protein and whole transcriptome co-map**. We …
dimension and demonstrated high-plex protein and whole transcriptome co-map**. We …
Oncometabolite d-2HG alters T cell metabolism to impair CD8+ T cell function
G Notarangelo, JB Spinelli, EM Perez, GJ Baker… - Science, 2022 - science.org
Gain-of-function mutations in isocitrate dehydrogenase (IDH) in human cancers result in the
production of d-2-hydroxyglutarate (d-2HG), an oncometabolite that promotes tumorigenesis …
production of d-2-hydroxyglutarate (d-2HG), an oncometabolite that promotes tumorigenesis …
Spatial biology of cancer evolution
Z Seferbekova, A Lomakin, LR Yates… - Nature Reviews …, 2023 - nature.com
The natural history of cancers can be understood through the lens of evolution given that the
driving forces of cancer development are mutation and selection of fitter clones. Cancer …
driving forces of cancer development are mutation and selection of fitter clones. Cancer …
High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers
Precision medicine is critically dependent on better methods for diagnosing and staging
disease and predicting drug response. Histopathology using hematoxylin and eosin (H&E) …
disease and predicting drug response. Histopathology using hematoxylin and eosin (H&E) …
Decoding the tumor microenvironment with spatial technologies
LA Walsh, DF Quail - Nature immunology, 2023 - nature.com
Visualization of the cellular heterogeneity and spatial architecture of the tumor
microenvironment (TME) is becoming increasingly important to understand mechanisms of …
microenvironment (TME) is becoming increasingly important to understand mechanisms of …
Exploring tissue architecture using spatial transcriptomics
Deciphering the principles and mechanisms by which gene activity orchestrates complex
cellular arrangements in multicellular organisms has far-reaching implications for research …
cellular arrangements in multicellular organisms has far-reaching implications for research …