Cryptic species conservation: a review

D Hending - Biological Reviews, 2025 - Wiley Online Library
Cryptic species are groups of two or more taxa that were previously classified as single
nominal species. Being almost morphologically indistinguishable, cryptic species have …

[PDF][PDF] How not to describe a species: lessons from a tangle of anacondas (Boidae: Eunectes Wagler, 1830)

W Wüster, H Kaiser, MS Hoogmoed… - Zoological Journal of …, 2024 - academic.oup.com
A recent revision of the anacondas (Serpentes: Boidae: Eunectes), with the description of a
new species of green anaconda, generated extensive publicity, but also provoked …

Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis)

KO Chan, CR Hutter, PL Wood Jr, YC Su… - Systematic …, 2022 - academic.oup.com
In cryptic amphibian complexes, there is a growing trend to equate high levels of genetic
structure with hidden cryptic species diversity. Typically, phylogenetic structure and distance …

Speciation Hypotheses from Phylogeographic Delimitation Yield an Integrative Taxonomy for Seal Salamanders (Desmognathus monticola)

RA Pyron, KA O'Connell, SC Duncan… - Systematic …, 2023 - academic.oup.com
Significant advances have been made in species delimitation and numerous methods can
test precisely defined models of speciation, though the synthesis of phylogeography and …

Widely used, short 16S rRNA mitochondrial gene fragments yield poor and erratic results in phylogenetic estimation and species delimitation of amphibians

KO Chan, ST Hertwig, DN Neokleous, JM Flury… - BMC Ecology and …, 2022 - Springer
Abstract Background The 16S mitochondrial rRNA gene is the most widely sequenced
molecular marker in amphibian systematic studies, making it comparable to the universal …

Candidate‐species delimitation in Desmognathus salamanders reveals gene flow across lineage boundaries, confounding phylogenetic estimation and clarifying …

RA Pyron, KA O'Connell, EM Lemmon… - Ecology and …, 2022 - Wiley Online Library
Abstract Dusky Salamanders (genus Desmognathus) currently comprise only 22 described,
extant species. However, recent mitochondrial and nuclear estimates indicate the presence …

Species delimitation, phylogenomics, and biogeography of Sulawesi flying lizards: a diversification history complicated by ancient hybridization, cryptic species, and …

JA Mcguire, X Huang, SB Reilly, DT Iskandar… - Systematic …, 2023 - academic.oup.com
The biota of Sulawesi is noted for its high degree of endemism and for its substantial levels
of in situ biological diversification. While the island's long period of isolation and dynamic …

Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex

M San Jose, C Doorenweerd, S Geib, N Barr… - Molecular Phylogenetics …, 2023 - Elsevier
As genomic data proliferates, the prevalence of post-speciation gene flow is making species
boundaries and relationships increasingly ambiguous. Although current approaches …

Unsupervised machine learning for species delimitation, integrative taxonomy, and biodiversity conservation

RA Pyron - Molecular Phylogenetics and Evolution, 2023 - Elsevier
Integrative taxonomy, combining data from multiple axes of biologically relevant variation, is
a major goal of systematics. Ideally, such taxonomies will derive from similarly integrative …

How to accurately delineate morphologically conserved taxa and diagnose their phenotypic disparities: species delimitation in cryptic Rhinolophidae (Chiroptera)

A Chornelia, J Lu, AC Hughes - Frontiers in Ecology and Evolution, 2022 - frontiersin.org
Systematics and taxonomy are the backbone of all components of biology and ecology, yet
cryptic species present a major challenge for accurate species identification. This is …