Host–transposon interactions: conflict, cooperation, and cooption

RL Cosby, NC Chang, C Feschotte - Genes & development, 2019 - genesdev.cshlp.org
Transposable elements (TEs) are mobile DNA sequences that colonize genomes and
threaten genome integrity. As a result, several mechanisms appear to have emerged during …

The role of ciliate protozoa in the rumen

CJ Newbold, G De La Fuente, A Belanche… - Frontiers in …, 2015 - frontiersin.org
First described in 1843, Rumen protozoa with their striking appearance were assumed to be
important for the welfare of their host. However, despite contributing up to 50% of the bio …

[HTML][HTML] The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through …

PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen… - PLoS …, 2014 - journals.plos.org
Current sampling of genomic sequence data from eukaryotes is relatively poor, biased, and
inadequate to address important questions about their biology, evolution, and ecology; this …

Non-model model organisms

JJ Russell, JA Theriot, P Sood, WF Marshall… - BMC biology, 2017 - Springer
Abstract Model organisms are widely used in research as accessible and convenient
systems to study a particular area or question in biology. Traditionally only a handful of …

The expanding implications of polyploidy

KP Schoenfelder, DT Fox - The Journal of cell biology, 2015 - pmc.ncbi.nlm.nih.gov
Polyploid cells, which contain more than two genome copies, occur throughout nature.
Beyond well-established roles in increasing cell size/metabolic output, polyploidy can also …

Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates

Z Li, X Wang, Y Zhang, Z Yu, T Zhang, X Dai… - The ISME …, 2022 - academic.oup.com
Understanding the biodiversity and genetics of gut microbiomes has important implications
for host physiology and industrial enzymes, whereas most studies have been focused on …

Genetic codes with no dedicated stop codon: context-dependent translation termination

EC Swart, V Serra, G Petroni, M Nowacki - Cell, 2016 - cell.com
The prevailing view of the nuclear genetic code is that it is largely frozen and unambiguous.
Flexibility in the nuclear genetic code has been demonstrated in ciliates that reassign …

Cancer progression as a sequence of atavistic reversionsFree GPT-4 DeepSeek

CH Lineweaver, KJ Bussey, AC Blackburn… - …, 2021 - Wiley Online Library
It has long been recognized that cancer onset and progression represent a type of reversion
to an ancestral quasi‐unicellular phenotype. This general concept has been refined into the …

The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development

X Chen, JR Bracht, AD Goldman, E Dolzhenko… - Cell, 2014 - cell.com
Programmed DNA rearrangements in the single-celled eukaryote Oxytricha trifallax
completely rewire its germline into a somatic nucleus during development. This elaborate …

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

EP Hamilton, A Kapusta, PE Huvos, SL Bidwell, N Zafar… - elife, 2016 - elifesciences.org
The germline genome of the binucleated ciliate Tetrahymena thermophila undergoes
programmed chromosome breakage and massive DNA elimination to generate the somatic …