Human-specific genetics: new tools to explore the molecular and cellular basis of human evolution

AA Pollen, U Kilik, CB Lowe, JG Camp - Nature Reviews Genetics, 2023 - nature.com
Our ancestors acquired morphological, cognitive and metabolic modifications that enabled
humans to colonize diverse habitats, develop extraordinary technologies and reshape the …

Mechanisms of change in gene copy number

PJ Hastings, JR Lupski, SM Rosenberg… - Nature Reviews Genetics, 2009 - nature.com
Deletions and duplications of chromosomal segments (copy number variants, CNVs) are a
major source of variation between individual humans and are an underlying factor in human …

[HTML][HTML] Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders

D Porubsky, W Höps, H Ashraf, PH Hsieh… - Cell, 2022 - cell.com
Unlike copy number variants (CNVs), inversions remain an underexplored genetic variation
class. By integrating multiple genomic technologies, we discover 729 inversions in 41 …

Human-specific NOTCH2NL genes expand cortical neurogenesis through Delta/Notch regulation

IK Suzuki, D Gacquer, R Van Heurck, D Kumar… - Cell, 2018 - cell.com
The cerebral cortex underwent rapid expansion and increased complexity during recent
hominid evolution. Gene duplications constitute a major evolutionary force, but their impact …

High-resolution comparative analysis of great ape genomes

ZN Kronenberg, IT Fiddes, D Gordon, S Murali… - Science, 2018 - science.org
INTRODUCTION Understanding the genetic differences that make us human is a long-
standing endeavor that requires the comprehensive discovery and comparison of all forms …

Phylogenomic analyses provide insights into primate evolution

Y Shao, L Zhou, F Li, L Zhao, BL Zhang, F Shao… - Science, 2023 - science.org
Comparative analysis of primate genomes within a phylogenetic context is essential for
understanding the evolution of human genetic architecture and primate diversity. We present …

Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3

MV Han, GWC Thomas… - … biology and evolution, 2013 - academic.oup.com
Current sequencing methods produce large amounts of data, but genome assemblies
constructed from these data are often fragmented and incomplete. Incomplete and error …

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

S Gnerre, I MacCallum, D Przybylski… - Proceedings of the …, 2011 - National Acad Sciences
Massively parallel DNA sequencing technologies are revolutionizing genomics by making it
possible to generate billions of relatively short (~ 100-base) sequence reads at very low …

Global diversity, population stratification, and selection of human copy-number variation

PH Sudmant, S Mallick, BJ Nelson, F Hormozdiari… - Science, 2015 - science.org
INTRODUCTION Most studies of human genetic variation have focused on single-nucleotide
variants (SNVs). However, copy-number variants (CNVs) affect more base pairs of DNA …

The bonobo genome compared with the chimpanzee and human genomes

K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller… - Nature, 2012 - nature.com
Two African apes are the closest living relatives of humans: the chimpanzee (Pan
troglodytes) and the bonobo (Pan paniscus). Although they are similar in many respects …