The diverse roles of DNA methylation in mammalian development and disease

MVC Greenberg, D Bourc'his - Nature reviews Molecular cell biology, 2019 - nature.com
DNA methylation is of paramount importance for mammalian embryonic development. DNA
methylation has numerous functions: it is implicated in the repression of transposons and …

Transposable elements in mammalian chromatin organization

HA Lawson, Y Liang, T Wang - Nature Reviews Genetics, 2023 - nature.com
Transposable elements (TEs) are mobile DNA elements that comprise almost 50% of
mammalian genomic sequence. TEs are capable of making additional copies of themselves …

Dynamics of the epigenetic landscape during the maternal-to-zygotic transition

MA Eckersley-Maslin, C Alda-Catalinas… - … Reviews Molecular Cell …, 2018 - nature.com
A remarkable epigenetic remodelling process occurs shortly after fertilization, which restores
totipotency to the zygote. This involves global DNA demethylation, chromatin remodelling …

Taming transposable elements in vertebrates: from epigenetic silencing to domestication

MV Almeida, G Vernaz, ALK Putman, EA Miska - Trends in Genetics, 2022 - cell.com
Transposable element (TE)-derived sequences are ubiquitous in most eukaryotic genomes
known to date. Because their expression and mobility can lead to genomic instability …

Mammalian genome innovation through transposon domestication

AJ Modzelewski, J Gan Chong, T Wang, L He - Nature cell biology, 2022 - nature.com
Since the discovery of transposons, their sheer abundance in host genomes has puzzled
many. While historically viewed as largely harmless 'parasitic'DNAs during evolution …

Mammalian transposable elements and their impacts on genome evolution

RN Platt, MW Vandewege, DA Ray - Chromosome Research, 2018 - Springer
Transposable elements (TEs) are genetic elements with the ability to mobilize and replicate
themselves in a genome. Mammalian genomes are dominated by TEs, which can reach …

Isoform-resolved transcriptome of the human preimplantation embryo

D Torre, NJ Francoeur, Y Kalma, I Gross Carmel… - Nature …, 2023 - nature.com
Human preimplantation development involves extensive remodeling of RNA expression and
splicing. However, its transcriptome has been compiled using short-read sequencing data …

The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes

L Robbez-Masson, CHC Tie, L Conde… - Genome …, 2018 - genome.cshlp.org
Retrotransposons encompass half of the human genome and contribute to the formation of
heterochromatin, which provides nuclear structure and regulates gene expression. Here, we …

Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression

NC Chang, Q Rovira, J Wells, C Feschotte… - Genome …, 2022 - genome.cshlp.org
There is considerable interest in understanding the effect of transposable elements (TEs) on
embryonic development. Studies in humans and mice are limited by the difficulty of working …

TFs for TEs: the transcription factor repertoire of mammalian transposable elements

C Hermant, ME Torres-Padilla - Genes & development, 2021 - genesdev.cshlp.org
Transposable elements (TEs) are genetic elements capable of changing position within the
genome. Although their mobilization can constitute a threat to genome integrity, nearly half …