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Interpretable and explainable machine learning: A methods‐centric overview with concrete examples
Interpretability and explainability are crucial for machine learning (ML) and statistical
applications in medicine, economics, law, and natural sciences and form an essential …
applications in medicine, economics, law, and natural sciences and form an essential …
Interpretability and explainability: A machine learning zoo mini-tour
In this review, we examine the problem of designing interpretable and explainable machine
learning models. Interpretability and explainability lie at the core of many machine learning …
learning models. Interpretability and explainability lie at the core of many machine learning …
Permutation-based identification of important biomarkers for complex diseases via machine learning models
X Mi, B Zou, F Zou, J Hu - Nature communications, 2021 - nature.com
Study of human disease remains challenging due to convoluted disease etiologies and
complex molecular mechanisms at genetic, genomic, and proteomic levels. Many machine …
complex molecular mechanisms at genetic, genomic, and proteomic levels. Many machine …
A pan-tissue DNA-methylation epigenetic clock based on deep learning
Several age predictors based on DNA methylation, dubbed epigenetic clocks, have been
created in recent years, with the vast majority based on regularized linear regression. This …
created in recent years, with the vast majority based on regularized linear regression. This …
Concrete autoencoders: Differentiable feature selection and reconstruction
We introduce the concrete autoencoder, an end-to-end differentiable method for global
feature selection, which efficiently identifies a subset of the most informative features and …
feature selection, which efficiently identifies a subset of the most informative features and …
Epigenetic ageing clocks: statistical methods and emerging computational challenges
Over the past decade, epigenetic clocks have emerged as powerful machine learning tools,
not only to estimate chronological and biological age but also to assess the efficacy of anti …
not only to estimate chronological and biological age but also to assess the efficacy of anti …
Deep knockoffs
This article introduces a machine for sampling approximate model-X knockoffs for arbitrary
and unspecified data distributions using deep generative models. The main idea is to …
and unspecified data distributions using deep generative models. The main idea is to …
Computational frameworks integrating deep learning and statistical models in mining multimodal omics data
Background In health research, multimodal omics data analysis is widely used to address
important clinical and biological questions. Traditional statistical methods rely on the strong …
important clinical and biological questions. Traditional statistical methods rely on the strong …
High dimensional, tabular deep learning with an auxiliary knowledge graph
Abstract Machine learning models exhibit strong performance on datasets with abundant
labeled samples. However, for tabular datasets with extremely high $ d $-dimensional …
labeled samples. However, for tabular datasets with extremely high $ d $-dimensional …
A performance-driven benchmark for feature selection in tabular deep learning
Academic tabular benchmarks often contain small sets of curated features. In contrast, data
scientists typically collect as many features as possible into their datasets, and even …
scientists typically collect as many features as possible into their datasets, and even …