[HTML][HTML] Advances in optical map** for genomic research

Y Yuan, CYL Chung, TF Chan - Computational and Structural …, 2020 - Elsevier
Recent advances in optical map** have allowed the construction of improved genome
assemblies with greater contiguity. Optical map** also enables genome comparison and …

[PDF][PDF] Improving Contiguity and Accuracy in Genome Assembly.

R Walve - 2023 - helda.helsinki.fi
Though genome analysis is used in other places, understanding the effects genes have on
humans is arguably its most significant use. A fundamental roadblock to genome analysis is …

Fast genomic optical map assembly algorithm using binary representation

P Stawczyk, R Nowak - ar** data
R Walve, SJ Puglisi, L Salmela - IEEE/ACM Transactions on …, 2021 - ieeexplore.ieee.org
A key problem in processing raw optical map** data (Rmaps) is finding Rmaps originating
from the same genomic region. These sets of related Rmaps can be used to correct errors in …

Determining optical map** errors by simulations

M Vašinek, M Běhálek, P Gajdoš, R Fillerová… - …, 2021 - academic.oup.com
Motivation Optical map** is a complementary technology to traditional DNA sequencing
technologies, such as next-generation sequencing (NGS). It provides genome-wide, high …

PerFSeeB: designing long high-weight single spaced seeds for full sensitivity alignment with a given number of mismatches

V Titarenko, S Titarenko - BMC bioinformatics, 2023 - Springer
Background Technical progress in computational hardware allows researchers to use new
approaches for sequence alignment problems. For a given sequence, we usually use …

Finding Overlap** Rmaps via Clustering

K Mukherjee, D Dole-Muinos, M Rossi… - IEEE/ACM …, 2021 - ieeexplore.ieee.org
Optical map** is a method for creating high resolution restriction maps of an entire
genome. Optical map** has been largely automated, and first produces single molecule …

Finding Overlap** Rmaps via Gaussian Mixture Model Clustering

K Mukherjee, M Rossi, D Dole-Muinos, A Ajayi… - bioRxiv, 2021 - biorxiv.org
Optical map** is a method for creating high resolution restriction maps of an entire
genome. Optical map** has been largely automated, and first produces single molecule …

Assembly of Two CCDD Rice Genomes, Oryza grandiglumis and Oryza latifolia, and the Study of Their Evolutionary Changes

AO Alsantely - 2021 - repository.kaust.edu.sa
Every day more than half of the world consumes rice as a primary dietary resource. Thus,
rice is one of the most important food crops in the world. Rice and its wild relatives are part of …

Algorithms for Single-Molecule Optical Maps

K Mukherjee - 2021 - search.proquest.com
Optical maps are high resolution restriction maps that give a unique numeric representation
to a genome. Used in concert with sequence reads, they provide a useful tool for genome …