Ensembl 2023

FJ Martin, MR Amode, A Aneja… - Nucleic acids …, 2023 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) has produced high-quality genomic resources
for vertebrates and model organisms for more than twenty years. During that time, our …

New approaches for genome assembly and scaffolding

ES Rice, RE Green - Annual review of animal biosciences, 2019 - annualreviews.org
Affordable, high-throughput DNA sequencing has accelerated the pace of genome
assembly over the past decade. Genome assemblies from high-throughput, short-read …

The origins and spread of domestic horses from the Western Eurasian steppes

P Librado, N Khan, A Fages, MA Kusliy, T Suchan… - Nature, 2021 - nature.com
Domestication of horses fundamentally transformed long-range mobility and warfare.
However, modern domesticated breeds do not descend from the earliest domestic horse …

Widespread horse-based mobility arose around 2200 bce in Eurasia

P Librado, G Tressières, L Chauvey, A Fages, N Khan… - Nature, 2024 - nature.com
Horses revolutionized human history with fast mobility. However, the timeline between their
domestication and their widespread integration as a means of transport remains …

Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post‐genome era

T Raudsepp, CJ Finno, RR Bellone… - Animal …, 2019 - Wiley Online Library
The horse reference genome from the Thoroughbred mare Twilight has been available for a
decade and, together with advances in genomics technologies, has led to unparalleled …

Glacial ice supports a distinct and undocumented polar bear subpopulation persisting in late 21st-century sea-ice conditions

KL Laidre, MA Supple, EW Born, EV Regehr, Ø Wiig… - Science, 2022 - science.org
Polar bears are susceptible to climate warming because of their dependence on sea ice,
which is declining rapidly. We present the first evidence for a genetically distinct and …

Commonly used Hardy–Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data

WS Pearman, L Urban… - Molecular Ecology …, 2022 - Wiley Online Library
Reduced representation sequencing (RRS) is a widely used method to assay the diversity of
genetic loci across the genome of an organism. The dominant class of RRS approaches …

Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease

W Wang, D Peng, RP Baptista, Y Li, JC Kissinger… - PLoS …, 2021 - journals.plos.org
The protozoan Trypanosoma cruzi almost invariably establishes life-long infections in
humans and other mammals, despite the development of potent host immune responses …

Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses

MR Stothart, PD McLoughlin, SA Medill… - Nature …, 2024 - nature.com
Gut microbiomes are widely hypothesised to influence host fitness and have been
experimentally shown to affect host health and phenotypes under laboratory conditions …

Epigenetic models developed for plains zebras predict age in domestic horses and endangered equids

B Larison, GM Pinho, A Haghani, JA Zoller… - Communications …, 2021 - nature.com
Effective conservation and management of threatened wildlife populations require an
accurate assessment of age structure to estimate demographic trends and population …