Ensembl 2023
FJ Martin, MR Amode, A Aneja… - Nucleic acids …, 2023 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) has produced high-quality genomic resources
for vertebrates and model organisms for more than twenty years. During that time, our …
for vertebrates and model organisms for more than twenty years. During that time, our …
New approaches for genome assembly and scaffolding
Affordable, high-throughput DNA sequencing has accelerated the pace of genome
assembly over the past decade. Genome assemblies from high-throughput, short-read …
assembly over the past decade. Genome assemblies from high-throughput, short-read …
The origins and spread of domestic horses from the Western Eurasian steppes
Domestication of horses fundamentally transformed long-range mobility and warfare.
However, modern domesticated breeds do not descend from the earliest domestic horse …
However, modern domesticated breeds do not descend from the earliest domestic horse …
Widespread horse-based mobility arose around 2200 bce in Eurasia
Horses revolutionized human history with fast mobility. However, the timeline between their
domestication and their widespread integration as a means of transport remains …
domestication and their widespread integration as a means of transport remains …
Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post‐genome era
The horse reference genome from the Thoroughbred mare Twilight has been available for a
decade and, together with advances in genomics technologies, has led to unparalleled …
decade and, together with advances in genomics technologies, has led to unparalleled …
Glacial ice supports a distinct and undocumented polar bear subpopulation persisting in late 21st-century sea-ice conditions
Polar bears are susceptible to climate warming because of their dependence on sea ice,
which is declining rapidly. We present the first evidence for a genetically distinct and …
which is declining rapidly. We present the first evidence for a genetically distinct and …
Commonly used Hardy–Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data
WS Pearman, L Urban… - Molecular Ecology …, 2022 - Wiley Online Library
Reduced representation sequencing (RRS) is a widely used method to assay the diversity of
genetic loci across the genome of an organism. The dominant class of RRS approaches …
genetic loci across the genome of an organism. The dominant class of RRS approaches …
Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease
The protozoan Trypanosoma cruzi almost invariably establishes life-long infections in
humans and other mammals, despite the development of potent host immune responses …
humans and other mammals, despite the development of potent host immune responses …
Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses
MR Stothart, PD McLoughlin, SA Medill… - Nature …, 2024 - nature.com
Gut microbiomes are widely hypothesised to influence host fitness and have been
experimentally shown to affect host health and phenotypes under laboratory conditions …
experimentally shown to affect host health and phenotypes under laboratory conditions …
Epigenetic models developed for plains zebras predict age in domestic horses and endangered equids
Effective conservation and management of threatened wildlife populations require an
accurate assessment of age structure to estimate demographic trends and population …
accurate assessment of age structure to estimate demographic trends and population …