Function and functional redundancy in microbial systems

S Louca, MF Polz, F Mazel, MBN Albright… - Nature ecology & …, 2018 - nature.com
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …

Inferring microbiota functions from taxonomic genes: a review

C Djemiel, PA Maron, S Terrat, S Dequiedt… - …, 2022 - academic.oup.com
Deciphering microbiota functions is crucial to predict ecosystem sustainability in response to
global change. High-throughput sequencing at the individual or community level has …

Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants

T Tamura, J Ito, K Uriu, J Zahradnik, I Kida… - Nature …, 2023 - nature.com
Abstract In late 2022, SARS-CoV-2 Omicron subvariants have become highly diversified,
and XBB is spreading rapidly around the world. Our phylogenetic analyses suggested that …

Virological characteristics of the SARS-CoV-2 Omicron BA. 2 subvariants, including BA. 4 and BA. 5

I Kimura, D Yamasoba, T Tamura, N Nao, T Suzuki… - Cell, 2022 - cell.com
After the global spread of the SARS-CoV-2 Omicron BA. 2, some BA. 2 subvariants,
including BA. 2.9. 1, BA. 2.11, BA. 2.12. 1, BA. 4, and BA. 5, emerged in multiple countries …

The evolutionary drivers and correlates of viral host jumps

CCS Tan, L van Dorp, F Balloux - Nature ecology & evolution, 2024 - nature.com
Most emerging and re-emerging infectious diseases stem from viruses that naturally
circulate in non-human vertebrates. When these viruses cross over into humans, they can …

PICRUSt2 for prediction of metagenome functions

GM Douglas, VJ Maffei, JR Zaneveld, SN Yurgel… - Nature …, 2020 - nature.com
To the Editor—One limitation of microbial community marker-gene sequencing is that it does
not provide information about the functional composition of sampled communities …

The human tumor microbiome is composed of tumor type–specific intracellular bacteria

D Nejman, I Livyatan, G Fuks, N Gavert, Y Zwang… - Science, 2020 - science.org
Bacteria were first detected in human tumors more than 100 years ago, but the
characterization of the tumor microbiome has remained challenging because of its low …

[HTML][HTML] Single-cell genomic variation induced by mutational processes in cancer

T Funnell, CH O'Flanagan, MJ Williams, A McPherson… - Nature, 2022 - nature.com
How cell-to-cell copy number alterations that underpin genomic instability in human cancers
drive genomic and phenotypic variation, and consequently the evolution of cancer, remains …

Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community

A Canarini, H Schmidt, L Fuchslueger, V Martin… - Nature …, 2021 - nature.com
Climate change is altering the frequency and severity of drought events. Recent evidence
indicates that drought may produce legacy effects on soil microbial communities. However, it …

Composition and metabolism of microbial communities in soil pores

Z Li, AN Kravchenko, A Cupples, AK Guber… - Nature …, 2024 - nature.com
Delineation of microbial habitats within the soil matrix and characterization of their
environments and metabolic processes are crucial to understand soil functioning, yet their …