Hot spots—A review of the protein–protein interface determinant amino‐acid residues

IS Moreira, PA Fernandes… - … : Structure, Function, and …, 2007 - Wiley Online Library
Proteins tendency to bind to one another in a highly specific manner forming stable
complexes is fundamental to all biological processes. A better understanding of complex …

[HTML][HTML] Electrostatic aspects of protein–protein interactions

FB Sheinerman, R Norel, B Honig - Current opinion in structural biology, 2000 - Elsevier
Structural and mutational analyses reveal a central role for electrostatic interactions in
protein–protein association. Experiment and theory both demonstrate that clusters of …

Principles of protein− protein interactions: what are the preferred ways for proteins to interact?

O Keskin, A Gursoy, B Ma, R Nussinov - Chemical reviews, 2008 - ACS Publications
Proteins are the working horse of the cellular machinery. They are responsible for diverse
functions ranging from molecular motors to signaling. They catalyze reactions, transport …

The Poisson–Boltzmann equation for biomolecular electrostatics: a tool for structural biology

F Fogolari, A Brigo, H Molinari - Journal of Molecular …, 2002 - Wiley Online Library
Electrostatics plays a fundamental role in virtually all processes involving biomolecules in
solution. The Poisson–Boltzmann equation constitutes one of the most fundamental …

Folding funnels, binding funnels, and protein function

CJ Tsai, S Kumar, B Ma, R Nussinov - Protein Science, 1999 - cambridge.org
Folding funnels have been the focus of considerable attention during the last few years.
These have mostly been discussed in the general context of the theory of protein folding …

The power of two: protein dimerization in biology

NJ Marianayagam, M Sunde, JM Matthews - Trends in biochemical …, 2004 - cell.com
The self-association of proteins to form dimers and higher-order oligomers is a very common
phenomenon. Recent structural and biophysical studies show that protein dimerization or …

Close‐range electrostatic interactions in proteins

S Kumar, R Nussinov - ChemBioChem, 2002 - Wiley Online Library
Two types of noncovalent bonding interactions are present in protein structures, specific and
nonspecific. Nonspecific interactions are mostly hydrophobic and van der Waals. Specific …

Protein–protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

B Ma, T Elkayam, H Wolfson… - Proceedings of the …, 2003 - National Acad Sciences
Polar residue hot spots have been observed at protein–protein binding sites. Here we show
that hot spots occur predominantly at the interfaces of macromolecular complexes …

Withanone from Withania somnifera Attenuates SARS-CoV-2 RBD and Host ACE2 Interactions to Rescue Spike Protein Induced Pathologies in Humanized Zebrafish …

A Balkrishna, S Pokhrel, H Singh, M Joshi… - Drug design …, 2021 - Taylor & Francis
Purpose SARS-CoV-2 engages human ACE2 through its spike (S) protein receptor binding
domain (RBD) to enter the host cell. Recent computational studies have reported that …

How do thermophilic proteins deal with heat?

S Kumar, R Nussinov - Cellular and Molecular Life Sciences CMLS, 2001 - Springer
Recent years have witnessed an explosion of sequence and structural information for
proteins from hyperthermophilic and thermophilic organisms. Complete genome sequences …