Hot spots—A review of the protein–protein interface determinant amino‐acid residues

IS Moreira, PA Fernandes… - … : Structure, Function, and …, 2007 - Wiley Online Library
Proteins tendency to bind to one another in a highly specific manner forming stable
complexes is fundamental to all biological processes. A better understanding of complex …

Principles of protein− protein interactions: what are the preferred ways for proteins to interact?

O Keskin, A Gursoy, B Ma, R Nussinov - Chemical reviews, 2008 - ACS Publications
Proteins are the working horse of the cellular machinery. They are responsible for diverse
functions ranging from molecular motors to signaling. They catalyze reactions, transport …

Withanone from Withania somnifera Attenuates SARS-CoV-2 RBD and Host ACE2 Interactions to Rescue Spike Protein Induced Pathologies in Humanized Zebrafish …

A Balkrishna, S Pokhrel, H Singh, M Joshi… - Drug design …, 2021 - Taylor & Francis
Purpose SARS-CoV-2 engages human ACE2 through its spike (S) protein receptor binding
domain (RBD) to enter the host cell. Recent computational studies have reported that …

Structural and thermodynamic analysis of the GFP: GFP‐nanobody complex

MH Kubala, O Kovtun, K Alexandrov… - Protein …, 2010 - Wiley Online Library
The green fluorescent protein (GFP)‐nanobody is a single‐chain VHH antibody domain
developed with specific binding activity against GFP and is emerging as a powerful tool for …

The power of two: protein dimerization in biology

NJ Marianayagam, M Sunde, JM Matthews - Trends in biochemical …, 2004 - cell.com
The self-association of proteins to form dimers and higher-order oligomers is a very common
phenomenon. Recent structural and biophysical studies show that protein dimerization or …

The Poisson–Boltzmann equation for biomolecular electrostatics: a tool for structural biology

F Fogolari, A Brigo, H Molinari - Journal of Molecular …, 2002 - Wiley Online Library
Electrostatics plays a fundamental role in virtually all processes involving biomolecules in
solution. The Poisson–Boltzmann equation constitutes one of the most fundamental …

[HTML][HTML] Electrostatic aspects of protein–protein interactions

FB Sheinerman, R Norel, B Honig - Current opinion in structural biology, 2000 - Elsevier
Structural and mutational analyses reveal a central role for electrostatic interactions in
protein–protein association. Experiment and theory both demonstrate that clusters of …

Close‐range electrostatic interactions in proteins

S Kumar, R Nussinov - ChemBioChem, 2002 - Wiley Online Library
Two types of noncovalent bonding interactions are present in protein structures, specific and
nonspecific. Nonspecific interactions are mostly hydrophobic and van der Waals. Specific …

Folding funnels, binding funnels, and protein function

CJ Tsai, S Kumar, B Ma, R Nussinov - Protein Science, 1999 - cambridge.org
Folding funnels have been the focus of considerable attention during the last few years.
These have mostly been discussed in the general context of the theory of protein folding …

[KNIHA][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …