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Physics-based computational and theoretical approaches to intrinsically disordered proteins
Highlights•Liquid-liquid phase separation underlies the formation of membraneless
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
Understanding hydrophobic effects: Insights from water density fluctuations
NB Rego, AJ Patel - Annual Review of Condensed Matter …, 2022 - annualreviews.org
The aversion of hydrophobic solutes for water drives diverse interactions and assemblies
across materials science, biology, and beyond. Here, we review the theoretical …
across materials science, biology, and beyond. Here, we review the theoretical …
[HTML][HTML] Conformational stability and denaturation processes of proteins investigated by electrophoresis under extreme conditions
P Masson, S Lushchekina - Molecules, 2022 - mdpi.com
The functional structure of proteins results from marginally stable folded conformations.
Reversible unfolding, irreversible denaturation, and deterioration can be caused by …
Reversible unfolding, irreversible denaturation, and deterioration can be caused by …
Role of computational methods in going beyond X-ray crystallography to explore protein structure and dynamics
Protein structural biology came a long way since the determination of the first three-
dimensional structure of myoglobin about six decades ago. Across this period, X-ray …
dimensional structure of myoglobin about six decades ago. Across this period, X-ray …
Reversible switching between two common protein folds in a designed system using only temperature
TL Solomon, Y He, N Sari, Y Chen… - Proceedings of the …, 2023 - pnas.org
Naturally occurring metamorphic proteins have the ability to interconvert from one folded
state to another through either a limited set of mutations or by way of a change in the local …
state to another through either a limited set of mutations or by way of a change in the local …
[HTML][HTML] Studying rare events using forward-flux sampling: Recent breakthroughs and future outlook
S Hussain, A Haji-Akbari - The Journal of Chemical Physics, 2020 - pubs.aip.org
Rare events are processes that occur upon the emergence of unlikely fluctuations. Unlike
what their name suggests, rare events are fairly ubiquitous in nature, as the occurrence of …
what their name suggests, rare events are fairly ubiquitous in nature, as the occurrence of …
Environmental factors modulating protein conformations and their role in protein aggregation diseases
The adverse physiological conditions have been long known to impact protein synthesis,
folding and functionality. Major physiological factors such as the effect of pH, temperature …
folding and functionality. Major physiological factors such as the effect of pH, temperature …
Towards molecular movies with X-ray photon correlation spectroscopy
In this perspective article we highlight research opportunities and challenges in probing
structural dynamics of molecular systems using X-ray Photon Correlation Spectroscopy …
structural dynamics of molecular systems using X-ray Photon Correlation Spectroscopy …
Probing the non-covalent forces key to the thermodynamics of β-hairpin unfolding
Although it is well understood that the graph of the free energy of unfolding (ΔG) of a
globular protein with temperature approximates to a negative parabola, there is as yet no …
globular protein with temperature approximates to a negative parabola, there is as yet no …
Insights into the effects of different drying methods on protein oxidation and degradation characteristics of golden pompano (Trachinotus ovatus)
P Chen, Y Qiu, S Chen, Y Zhao, Y Wu, Y Wang - Frontiers in Nutrition, 2022 - frontiersin.org
The quality of dried fish products differs based on the drying method employed owing to the
different drying principles, with changes in protein affecting the quality of these products …
different drying principles, with changes in protein affecting the quality of these products …