Biogeochemistry of Earth before exoenzymes

N Mahmoudi, AD Steen, GP Halverson… - Nature …, 2023 - nature.com
Microorganisms that transform and oxidize organic material (that is, heterotrophs) play a
fundamental role in the geochemical cycling of key elements in the ocean. Through their …

Toward a natural history of microbial life

C Magnabosco, F Husain, MM Paoletti… - Annual Review of …, 2024 - annualreviews.org
For most of Earth's history life was microbial, with archaeal and bacterial cells mediating
biogeochemical cycles through their metabolisms and ecologies. This diversity was …

The Archean origin of oxygenic photosynthesis and extant cyanobacterial lineages

GP Fournier, KR Moore, LT Rangel… - … of the Royal …, 2021 - royalsocietypublishing.org
The record of the coevolution of oxygenic phototrophs and the environment is preserved in
three forms: genomes of modern organisms, diverse geochemical signals of surface …

Engineering Bacterial Chitinases for Industrial Application: From Protein Engineering to Bacterial Strains Mutation! A Comprehensive Review of Physical, Molecular …

J Han, M Ullah, V Andoh, MN Khan… - Journal of Agricultural …, 2024 - ACS Publications
Bacterial chitinases are integral in breaking down chitin, the natural polymer in crustacean
and insect exoskeletons. Their increasing utilization across various sectors such as …

Volatile organic compound metabolism on early Earth

SM Ledford, LK Meredith - Journal of Molecular Evolution, 2024 - Springer
Biogenic volatile organic compounds (VOCs) constitute a significant portion of gas-phase
metabolites in modern ecosystems and have unique roles in moderating atmospheric …

A timetree for phytoplasmas (Mollicutes) with new insights on patterns of evolution and diversification

Y Cao, V Trivellone, CH Dietrich - Molecular phylogenetics and evolution, 2020 - Elsevier
The first comprehensive timetree is presented for phytoplasmas, a diverse group of obligate
intracellular bacteria restricted to phloem sieve elements of vascular plants and tissues of …

In silico characterization of bacterial chitinase: illuminating its relationship with archaeal and eukaryotic cousins

B Dutta, J Deska, R Bandopadhyay… - Journal of Genetic …, 2021 - Springer
Background Chitin is one of the most abundant biopolymers on Earth, only trailing second
after cellulose. The enzyme chitinase is responsible for the degradation of chitin. Chitinases …

The molecular clock as a tool for understanding host-parasite evolution

RCM Warnock, J Engelstädter - The Evolution and Fossil Record of …, 2021 - Springer
The molecular clock in combination with evidence from the geological record can be applied
to infer the timing and dynamics of evolutionary events. This has enormous potential to shed …

Standard Candles for Dating Microbial Lineages

GP Fournier, CW Parsons, EM Cutts… - … Evolution: Methods and …, 2022 - Springer
Molecular clock analyses are challenging for microbial phylogenies, due to a lack of fossil
calibrations that can reliably provide absolute time constraints. An alternative source of …

DaTeR: error-correcting phylogenetic chronograms using relative time constraints

A Mondal, LT Rangel, JG Payette, GP Fournier… - …, 2023 - academic.oup.com
Motivation A chronogram is a dated phylogenetic tree whose branch lengths have been
scaled to represent time. Such chronograms are computed based on available date …