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An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
LN Mueller, MY Brusniak, DR Mani… - Journal of proteome …, 2008 - ACS Publications
Over the past decade, a series of experimental strategies for mass spectrometry based
quantitative proteomics and corresponding computational methodology for the processing of …
quantitative proteomics and corresponding computational methodology for the processing of …
Data processing for mass spectrometry-based metabolomics
M Katajamaa, M Orešič - Journal of chromatography A, 2007 - Elsevier
Modern analytical technologies afford comprehensive and quantitative investigation of a
multitude of different metabolites. Typical metabolomic experiments can therefore produce …
multitude of different metabolites. Typical metabolomic experiments can therefore produce …
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …
xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data
Background Detection of low abundance metabolites is important for de novo map** of
metabolic pathways related to diet, microbiome or environmental exposures. Multiple …
metabolic pathways related to diet, microbiome or environmental exposures. Multiple …
Normalization strategies for metabonomic analysis of urine samples
BM Warrack, S Hnatyshyn, KH Ott, MD Reily… - … of Chromatography B, 2009 - Elsevier
Unlike plasma and most biological fluids which have solute concentrations that are tightly
controlled, urine volume can vary widely based upon water consumption and other …
controlled, urine volume can vary widely based upon water consumption and other …
Optimized preprocessing of ultra-performance liquid chromatography/mass spectrometry urinary metabolic profiles for improved information recovery
KA Veselkov, LK Vingara, P Masson… - Analytical …, 2011 - ACS Publications
Ultra-performance liquid chromatography coupled to mass spectrometry (UPLC/MS) has
been used increasingly for measuring changes of low molecular weight metabolites in …
been used increasingly for measuring changes of low molecular weight metabolites in …
Analysis of immunoglobulin glycosylation by LC‐ESI‐MS of glycopeptides and oligosaccharides
Abstract Two LC‐ESI‐MS methods for the analysis of antibody glycosylation are presented.
In the first approach, tryptic glycopeptides are separated by RP chromatography and …
In the first approach, tryptic glycopeptides are separated by RP chromatography and …
Algorithms and tools for the preprocessing of LC–MS metabolomics data
Metabolomics encompasses the study of small molecules in a biological sample. Liquid
Chromatography coupled with Mass Spectrometry (LC–MS) profiling is an important …
Chromatography coupled with Mass Spectrometry (LC–MS) profiling is an important …
LC-MS alignment in theory and practice: a comprehensive algorithmic review
Liquid chromatography-mass spectrometry is widely used for comparative replicate sample
analysis in proteomics, lipidomics and metabolomics. Before statistical comparison …
analysis in proteomics, lipidomics and metabolomics. Before statistical comparison …
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
Background Liquid chromatography coupled to mass spectrometry (LC-MS) has become a
prominent tool for the analysis of complex proteomics and metabolomics samples. In many …
prominent tool for the analysis of complex proteomics and metabolomics samples. In many …